miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 102761 1.03 0.001694
Target:  5'- gAACCCGACGACGCGCCGUGGCAGCAAc -3'
miRNA:   3'- -UUGGGCUGCUGCGCGGCACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 12839 0.76 0.148004
Target:  5'- aAACCCGGCGGCGCcggcuagcacgcaGCCGUGGUuggucguguuGGCAAa -3'
miRNA:   3'- -UUGGGCUGCUGCG-------------CGGCACCG----------UCGUU- -5'
6754 5' -61.3 NC_001875.2 + 113607 0.76 0.152197
Target:  5'- cGAgUCGGCGGCGgGCCGcGGCGGCAAg -3'
miRNA:   3'- -UUgGGCUGCUGCgCGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 85341 0.75 0.172645
Target:  5'- cGCCCGccGCGAacgcCGaCGCCGUGGCGGCGu -3'
miRNA:   3'- uUGGGC--UGCU----GC-GCGGCACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 54588 0.75 0.172645
Target:  5'- cGCCCGGCGGCGCGCCcacgGcGCGGUAu -3'
miRNA:   3'- uUGGGCUGCUGCGCGGca--C-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 61899 0.75 0.181489
Target:  5'- uGGCCCGAC-ACGCGCCGUGucaCGGCGGa -3'
miRNA:   3'- -UUGGGCUGcUGCGCGGCACc--GUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 44000 0.74 0.205372
Target:  5'- cAGCCCGACGG-GCGCCGUGccCAGCGu -3'
miRNA:   3'- -UUGGGCUGCUgCGCGGCACc-GUCGUu -5'
6754 5' -61.3 NC_001875.2 + 98622 0.73 0.231929
Target:  5'- cGCCCGGCGAgccCGCGCCcgcGUuugccGGCAGCGAg -3'
miRNA:   3'- uUGGGCUGCU---GCGCGG---CA-----CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 77253 0.73 0.249214
Target:  5'- cGCgCCGugGGCGCGCCGccgGGCgaAGCGg -3'
miRNA:   3'- uUG-GGCugCUGCGCGGCa--CCG--UCGUu -5'
6754 5' -61.3 NC_001875.2 + 83317 0.73 0.249214
Target:  5'- uACCCG-CGgggcGCGCGCCG-GGCGGCGc -3'
miRNA:   3'- uUGGGCuGC----UGCGCGGCaCCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 92630 0.73 0.255208
Target:  5'- aAACCCGACGACGUGgCGguuGUAGCGg -3'
miRNA:   3'- -UUGGGCUGCUGCGCgGCac-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 112710 0.72 0.28037
Target:  5'- --gCUGACGGCGcCGCCGUGGUAGgCGc -3'
miRNA:   3'- uugGGCUGCUGC-GCGGCACCGUC-GUu -5'
6754 5' -61.3 NC_001875.2 + 42741 0.72 0.286961
Target:  5'- cGCgCGGCGACGCGCaugGUGaGCGGCGc -3'
miRNA:   3'- uUGgGCUGCUGCGCGg--CAC-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 80871 0.72 0.293673
Target:  5'- cGACUCGGCG-CGCGCCaaagaGUGGCagAGCAAg -3'
miRNA:   3'- -UUGGGCUGCuGCGCGG-----CACCG--UCGUU- -5'
6754 5' -61.3 NC_001875.2 + 128696 0.71 0.314542
Target:  5'- cGCCCGACGcCGCGuCCGc-GCAGCGGg -3'
miRNA:   3'- uUGGGCUGCuGCGC-GGCacCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 18269 0.71 0.329067
Target:  5'- uGGCCCaAUGGCGCGCCGUGcGCGaccGCGc -3'
miRNA:   3'- -UUGGGcUGCUGCGCGGCAC-CGU---CGUu -5'
6754 5' -61.3 NC_001875.2 + 13748 0.7 0.344082
Target:  5'- cGCgCGGCGuCGCGCacaaagugGUGGCAGCAGu -3'
miRNA:   3'- uUGgGCUGCuGCGCGg-------CACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 3140 0.7 0.359583
Target:  5'- aAGCCCGcugcGCgGACGCGgCGUcgGGCGGCGAg -3'
miRNA:   3'- -UUGGGC----UG-CUGCGCgGCA--CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 39666 0.7 0.359583
Target:  5'- uGGgCCGGCGGCGCGC---GGCGGCGAg -3'
miRNA:   3'- -UUgGGCUGCUGCGCGgcaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 81980 0.7 0.359583
Target:  5'- uGGCgCCGGCaaGGCGCGCCGgccGGCGcGCAAa -3'
miRNA:   3'- -UUG-GGCUG--CUGCGCGGCa--CCGU-CGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.