miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 129586 0.67 0.548546
Target:  5'- uGGCCCGcaGCGACaGCcaguuGCUGcGGCAGCAAc -3'
miRNA:   3'- -UUGGGC--UGCUG-CG-----CGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 128696 0.71 0.314542
Target:  5'- cGCCCGACGcCGCGuCCGc-GCAGCGGg -3'
miRNA:   3'- uUGGGCUGCuGCGC-GGCacCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 125477 0.67 0.538673
Target:  5'- uGCCCGACGACGaCaUCGUGGCcgAGUu- -3'
miRNA:   3'- uUGGGCUGCUGC-GcGGCACCG--UCGuu -5'
6754 5' -61.3 NC_001875.2 + 124868 0.69 0.426304
Target:  5'- uGCCCGcuguucaaGCaGCGCGCCGUGGCGaugucGCGg -3'
miRNA:   3'- uUGGGC--------UGcUGCGCGGCACCGU-----CGUu -5'
6754 5' -61.3 NC_001875.2 + 119454 0.7 0.375565
Target:  5'- cGGCCCGACGACgaGCGgcaCCGUGGCAc--- -3'
miRNA:   3'- -UUGGGCUGCUG--CGC---GGCACCGUcguu -5'
6754 5' -61.3 NC_001875.2 + 113662 0.68 0.462306
Target:  5'- cGCCCGcCGGCacCGCCacaGUGGCGGCGu -3'
miRNA:   3'- uUGGGCuGCUGc-GCGG---CACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 113607 0.76 0.152197
Target:  5'- cGAgUCGGCGGCGgGCCGcGGCGGCAAg -3'
miRNA:   3'- -UUgGGCUGCUGCgCGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 112710 0.72 0.28037
Target:  5'- --gCUGACGGCGcCGCCGUGGUAGgCGc -3'
miRNA:   3'- uugGGCUGCUGC-GCGGCACCGUC-GUu -5'
6754 5' -61.3 NC_001875.2 + 105896 0.67 0.548546
Target:  5'- uACCCGAUGGCGgG-CGcGGCGGCc- -3'
miRNA:   3'- uUGGGCUGCUGCgCgGCaCCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 102761 1.03 0.001694
Target:  5'- gAACCCGACGACGCGCCGUGGCAGCAAc -3'
miRNA:   3'- -UUGGGCUGCUGCGCGGCACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 100142 0.67 0.509442
Target:  5'- uGCgCCGGCGGCGCGCaagcGGCGGUc- -3'
miRNA:   3'- uUG-GGCUGCUGCGCGgca-CCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 98622 0.73 0.231929
Target:  5'- cGCCCGGCGAgccCGCGCCcgcGUuugccGGCAGCGAg -3'
miRNA:   3'- uUGGGCUGCU---GCGCGG---CA-----CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 94697 0.69 0.392021
Target:  5'- gAACCCGGCGAUGCGCaCGcGGaaagacGCAAa -3'
miRNA:   3'- -UUGGGCUGCUGCGCG-GCaCCgu----CGUU- -5'
6754 5' -61.3 NC_001875.2 + 94427 0.67 0.528861
Target:  5'- cGCCaCGGCcucuuccACGCGCCGUucgaacGGCGGCAGc -3'
miRNA:   3'- uUGG-GCUGc------UGCGCGGCA------CCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 92630 0.73 0.255208
Target:  5'- aAACCCGACGACGUGgCGguuGUAGCGg -3'
miRNA:   3'- -UUGGGCUGCUGCGCgGCac-CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 89775 0.67 0.508478
Target:  5'- --gUCGGCGACGCGCuCGUGcacgugcgcgaacGCAGCGc -3'
miRNA:   3'- uugGGCUGCUGCGCG-GCAC-------------CGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 85660 0.68 0.462306
Target:  5'- uAGCUuaauUGugGGCGCGCCGgccuGCAGCGAc -3'
miRNA:   3'- -UUGG----GCugCUGCGCGGCac--CGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 85341 0.75 0.172645
Target:  5'- cGCCCGccGCGAacgcCGaCGCCGUGGCGGCGu -3'
miRNA:   3'- uUGGGC--UGCU----GC-GCGGCACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 84154 0.69 0.443201
Target:  5'- -cCCCGcguugagaaacgcGCGGCGCGCCGcGGCcGCGu -3'
miRNA:   3'- uuGGGC-------------UGCUGCGCGGCaCCGuCGUu -5'
6754 5' -61.3 NC_001875.2 + 83588 0.69 0.400422
Target:  5'- -uCCCGGCGGgGCGCCGccGUAGCu- -3'
miRNA:   3'- uuGGGCUGCUgCGCGGCacCGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.