miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 37880 0.67 0.581078
Target:  5'- -cGGCGgGCCGCGccagcGGcuugcuGGCGCGGcACu -3'
miRNA:   3'- aaCCGCgCGGCGU-----UCuu----CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 92455 0.67 0.580055
Target:  5'- -cGGUGCacaggcacgagugGCCGCAGGGuAGGCacgagacgGCGGGCg -3'
miRNA:   3'- aaCCGCG-------------CGGCGUUCU-UCCG--------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 38460 0.68 0.570867
Target:  5'- -cGGCGCG-CGCuAGAAuuGGUGCAGcGCg -3'
miRNA:   3'- aaCCGCGCgGCGuUCUU--CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 98378 0.68 0.570867
Target:  5'- -gGGCGCGCCcCGAccacgacgagguGgcGGaCGCGGACg -3'
miRNA:   3'- aaCCGCGCGGcGUU------------CuuCC-GCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 105969 0.68 0.570867
Target:  5'- cUUGG-GCGCCGCAAu--GG-GCAGGCu -3'
miRNA:   3'- -AACCgCGCGGCGUUcuuCCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 118518 0.68 0.570867
Target:  5'- -cGGUuuGCGCUGCAAguggaacuGAAGGCGCucaacGGCg -3'
miRNA:   3'- aaCCG--CGCGGCGUU--------CUUCCGCGu----CUG- -5'
6755 3' -59.5 NC_001875.2 + 62754 0.68 0.570867
Target:  5'- gUGGCccGCGCCGUu-GAAcGCGCAGGg -3'
miRNA:   3'- aACCG--CGCGGCGuuCUUcCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 50511 0.68 0.567812
Target:  5'- --aGCGCGCCGCGcggcacgaugacgaGGAggAGGCGCcgccGGCg -3'
miRNA:   3'- aacCGCGCGGCGU--------------UCU--UCCGCGu---CUG- -5'
6755 3' -59.5 NC_001875.2 + 50369 0.68 0.564761
Target:  5'- -cGcGCGCGCCacugaccgcggaccaGCGuguacuuuuugcGGAcGGCGCAGACg -3'
miRNA:   3'- aaC-CGCGCGG---------------CGU------------UCUuCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 127329 0.68 0.564761
Target:  5'- -cGGUGCGCCGCuuuccgcagcGGaGCAGACg -3'
miRNA:   3'- aaCCGCGCGGCGuucuu-----CCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 19864 0.68 0.560699
Target:  5'- -cGGcCGCGUCGC-----GGCGCGGGCg -3'
miRNA:   3'- aaCC-GCGCGGCGuucuuCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 89484 0.68 0.560699
Target:  5'- gUGGCgcccucGCGCCGCAaccgcuugGGAAaGGUGCAGuugGCg -3'
miRNA:   3'- aACCG------CGCGGCGU--------UCUU-CCGCGUC---UG- -5'
6755 3' -59.5 NC_001875.2 + 85293 0.68 0.560699
Target:  5'- uUUGcGCGgGCgGCGc--GGGCGCGGGCa -3'
miRNA:   3'- -AAC-CGCgCGgCGUucuUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 31913 0.68 0.550583
Target:  5'- cUUGGcCGCGCUGCAccgc-GCGCGGGCc -3'
miRNA:   3'- -AACC-GCGCGGCGUucuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 3048 0.68 0.550583
Target:  5'- -gGGCaGCG-CGUAAGAGGcGCGCAGcgGCg -3'
miRNA:   3'- aaCCG-CGCgGCGUUCUUC-CGCGUC--UG- -5'
6755 3' -59.5 NC_001875.2 + 81686 0.68 0.550583
Target:  5'- -aGGCG-GCCauGC-AGAAGGCGCgccAGGCg -3'
miRNA:   3'- aaCCGCgCGG--CGuUCUUCCGCG---UCUG- -5'
6755 3' -59.5 NC_001875.2 + 41603 0.68 0.550583
Target:  5'- -aGGCGCgGgCGC----GGGCGCGGGCa -3'
miRNA:   3'- aaCCGCG-CgGCGuucuUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 89928 0.68 0.550583
Target:  5'- -cGGCGCGuCCGCGGGccacuauuCGCGGGCa -3'
miRNA:   3'- aaCCGCGC-GGCGUUCuucc----GCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 110914 0.68 0.540523
Target:  5'- aUGGUGCucagGCUGCGAGggGGaaaCGGGCu -3'
miRNA:   3'- aACCGCG----CGGCGUUCuuCCgc-GUCUG- -5'
6755 3' -59.5 NC_001875.2 + 94320 0.68 0.540523
Target:  5'- -gGGCGCGUC-CAGGcAGGGCGCGu-- -3'
miRNA:   3'- aaCCGCGCGGcGUUC-UUCCGCGUcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.