miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 50017 0.66 0.642874
Target:  5'- -gGGCGCGCgugguCGCcGGgcGGCG-AGGCg -3'
miRNA:   3'- aaCCGCGCG-----GCGuUCuuCCGCgUCUG- -5'
6755 3' -59.5 NC_001875.2 + 99379 0.66 0.642874
Target:  5'- gUGGCcaaaGCGCCGCAccGgcGGCGCcaGCg -3'
miRNA:   3'- aACCG----CGCGGCGUu-CuuCCGCGucUG- -5'
6755 3' -59.5 NC_001875.2 + 112060 0.67 0.622225
Target:  5'- -cGGcCGCGUCGUcuuccAGcAGGuGCGCAGACa -3'
miRNA:   3'- aaCC-GCGCGGCGu----UC-UUC-CGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 99620 0.67 0.622225
Target:  5'- gUUGGCGUuCUGCAAGu-GGCGCaaguugaagGGGCa -3'
miRNA:   3'- -AACCGCGcGGCGUUCuuCCGCG---------UCUG- -5'
6755 3' -59.5 NC_001875.2 + 55337 0.67 0.622225
Target:  5'- aUGaCGCGCCGCuucGggGGCGCc--- -3'
miRNA:   3'- aACcGCGCGGCGuu-CuuCCGCGucug -5'
6755 3' -59.5 NC_001875.2 + 23824 0.67 0.619128
Target:  5'- -gGGCGCGCCGUgucucuggcGGGuGGGGUuaaagugcucgccaGCGGACg -3'
miRNA:   3'- aaCCGCGCGGCG---------UUC-UUCCG--------------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 34998 0.67 0.616033
Target:  5'- gUGcGCGCGCCGuCAAacAAGGCGCGcauaacguccagcuuGACg -3'
miRNA:   3'- aAC-CGCGCGGC-GUUc-UUCCGCGU---------------CUG- -5'
6755 3' -59.5 NC_001875.2 + 279 0.67 0.611907
Target:  5'- cUGGCGuCGCCGCAuGcuGGC-CAGGu -3'
miRNA:   3'- aACCGC-GCGGCGUuCuuCCGcGUCUg -5'
6755 3' -59.5 NC_001875.2 + 48035 0.67 0.611907
Target:  5'- gUGGC-CGCCGCccacaggcacGAGGGCGCGcGCu -3'
miRNA:   3'- aACCGcGCGGCGuu--------CUUCCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 18185 0.67 0.611907
Target:  5'- gUGGCgGUGCCGgc---GGGCGUAGGCg -3'
miRNA:   3'- aACCG-CGCGGCguucuUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 46032 0.67 0.605724
Target:  5'- cUGGC-CGCCGCGgaaaugcuucacaacAuGAAcGGCGCAGAa -3'
miRNA:   3'- aACCGcGCGGCGU---------------U-CUU-CCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 7010 0.67 0.605724
Target:  5'- gUGGCGCGCCaguugcuggacguaaGCGAGguGGcCGCGcGCu -3'
miRNA:   3'- aACCGCGCGG---------------CGUUCuuCC-GCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 82703 0.67 0.601605
Target:  5'- cUGGUaGCGCCGCcAGuc-GCGCAGGg -3'
miRNA:   3'- aACCG-CGCGGCGuUCuucCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 66009 0.67 0.601605
Target:  5'- cUGGCGCugcaguagagcaGCUGCAAGcgcuuGGcgccGCGCAGGCa -3'
miRNA:   3'- aACCGCG------------CGGCGUUCu----UC----CGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 37084 0.67 0.601605
Target:  5'- uUUGGCGgacgacacCGCCGCGuGGGuGUGCGGGCg -3'
miRNA:   3'- -AACCGC--------GCGGCGUuCUUcCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 47683 0.67 0.600576
Target:  5'- -cGGCGCGCCGCGcguuucucaacgcGGGGcaaGUGCAcGACu -3'
miRNA:   3'- aaCCGCGCGGCGU-------------UCUUc--CGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 39638 0.67 0.591327
Target:  5'- aUGGCGCGCagcgaaccgcgCGCGAGuuuGGGCcgGCGGcGCg -3'
miRNA:   3'- aACCGCGCG-----------GCGUUCu--UCCG--CGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 49543 0.67 0.591327
Target:  5'- --uGCGCGCCGCGccAGGGCGUcguguuguGGAUg -3'
miRNA:   3'- aacCGCGCGGCGUucUUCCGCG--------UCUG- -5'
6755 3' -59.5 NC_001875.2 + 126523 0.67 0.591327
Target:  5'- -cGGCGagcagguaGCgCGCAauGGAguggucgucGGGCGCGGGCa -3'
miRNA:   3'- aaCCGCg-------CG-GCGU--UCU---------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 10885 0.67 0.581078
Target:  5'- gUGGCGCuGCCGCGcaacguGuuGGCGCAa-- -3'
miRNA:   3'- aACCGCG-CGGCGUu-----CuuCCGCGUcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.