Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6755 | 3' | -59.5 | NC_001875.2 | + | 59219 | 0.71 | 0.380299 |
Target: 5'- uUUGGCGUGCCGCAGGccguaaacaaccugGAGGCcCAaGCg -3' miRNA: 3'- -AACCGCGCGGCGUUC--------------UUCCGcGUcUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 5928 | 0.71 | 0.382802 |
Target: 5'- gUUGGguaGCGCCGCGcaGGuGGGCGCGGcCu -3' miRNA: 3'- -AACCg--CGCGGCGU--UCuUCCGCGUCuG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 81067 | 0.71 | 0.388683 |
Target: 5'- aUGGUGCGCCGCGacgAGAAGaGcCGCguguucauagucaaAGACg -3' miRNA: 3'- aACCGCGCGGCGU---UCUUC-C-GCG--------------UCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 119414 | 0.7 | 0.408422 |
Target: 5'- -cGGCGCGCaCGCAAcGGccugcuuGGCGCGcGGCa -3' miRNA: 3'- aaCCGCGCG-GCGUU-CUu------CCGCGU-CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 110832 | 0.7 | 0.438717 |
Target: 5'- cUGGUGCGCCGCG-GAcuguauuugucguacGGGCaguugcgcuGCGGGCa -3' miRNA: 3'- aACCGCGCGGCGUuCU---------------UCCG---------CGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 117357 | 0.7 | 0.444196 |
Target: 5'- -cGGCGgGCCGgcuggccguCGGGGAGGCGCcGAg -3' miRNA: 3'- aaCCGCgCGGC---------GUUCUUCCGCGuCUg -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 112206 | 0.7 | 0.444196 |
Target: 5'- gUUGGggucuaCGCGCUGCAGcGAGGCGUGGAa -3' miRNA: 3'- -AACC------GCGCGGCGUUcUUCCGCGUCUg -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 43030 | 0.69 | 0.46273 |
Target: 5'- --cGCGCGCCGCGGc---GCGCGGGCu -3' miRNA: 3'- aacCGCGCGGCGUUcuucCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 11965 | 0.69 | 0.471202 |
Target: 5'- -cGGCGCGuuGCAaagcacuggcgacGGcguuGGGCGCGGGu -3' miRNA: 3'- aaCCGCGCggCGU-------------UCu---UCCGCGUCUg -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 39327 | 0.69 | 0.472148 |
Target: 5'- -cGGCGUGCgCGCGcuGcAGGCGCAGcCu -3' miRNA: 3'- aaCCGCGCG-GCGUu-CuUCCGCGUCuG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 64298 | 0.69 | 0.472148 |
Target: 5'- --cGCGUGCUGCAAGgcGGagcucCGCAGAUa -3' miRNA: 3'- aacCGCGCGGCGUUCuuCC-----GCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 66115 | 0.69 | 0.480707 |
Target: 5'- -cGGCGgGCgGCGAGgcGGCGCcgcccgcGGAa -3' miRNA: 3'- aaCCGCgCGgCGUUCuuCCGCG-------UCUg -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 80971 | 0.69 | 0.481663 |
Target: 5'- gUGGcCGCGCCGCccgagcaaAAGcugcugcugaaaAAGGCGCGcGACg -3' miRNA: 3'- aACC-GCGCGGCG--------UUC------------UUCCGCGU-CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 124781 | 0.69 | 0.481663 |
Target: 5'- gUGGCGuCGCCGCAgcGGAaccaggccgacaAGcGCGCGGcCa -3' miRNA: 3'- aACCGC-GCGGCGU--UCU------------UC-CGCGUCuG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 1497 | 0.69 | 0.491268 |
Target: 5'- -cGGUGCGUCaGCGAcGAcccugccuuuuGGGUGCGGGCg -3' miRNA: 3'- aaCCGCGCGG-CGUU-CU-----------UCCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 116914 | 0.69 | 0.491268 |
Target: 5'- --cGCGCGCgGCGGGu-GGCGCAcaauGACg -3' miRNA: 3'- aacCGCGCGgCGUUCuuCCGCGU----CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 122132 | 0.69 | 0.491268 |
Target: 5'- -gGGCGCGgCGCGGccGGcGCGCAcGACg -3' miRNA: 3'- aaCCGCGCgGCGUUcuUC-CGCGU-CUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 67247 | 0.69 | 0.491268 |
Target: 5'- -cGGCGUGCCGUugcAGAAGGUGgCGcGCu -3' miRNA: 3'- aaCCGCGCGGCGu--UCUUCCGC-GUcUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 85226 | 0.69 | 0.49999 |
Target: 5'- -cGGUaGCGCCGCAugucgacgagcgcGGGuuccgcgcucGGCGCGGACa -3' miRNA: 3'- aaCCG-CGCGGCGU-------------UCUu---------CCGCGUCUG- -5' |
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6755 | 3' | -59.5 | NC_001875.2 | + | 97882 | 0.68 | 0.520596 |
Target: 5'- --uGCGCGCCGCAcGGGcacguugcGGGCGUcGGCg -3' miRNA: 3'- aacCGCGCGGCGU-UCU--------UCCGCGuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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