miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 102302 1.07 0.001091
Target:  5'- aUUGGCGCGCCGCAAGAAGGCGCAGACa -3'
miRNA:   3'- -AACCGCGCGGCGUUCUUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 24001 0.81 0.087998
Target:  5'- -cGcGCGCGUCGCAAGGcgcaccGGGCGCGGGCu -3'
miRNA:   3'- aaC-CGCGCGGCGUUCU------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 120067 0.78 0.127554
Target:  5'- -aGGCGCGCCGCGAGGuuGGCGauGACg -3'
miRNA:   3'- aaCCGCGCGGCGUUCUu-CCGCguCUG- -5'
6755 3' -59.5 NC_001875.2 + 42859 0.78 0.130936
Target:  5'- -cGGCGCGCCGC----AGGCGCAGGu -3'
miRNA:   3'- aaCCGCGCGGCGuucuUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 72556 0.76 0.178436
Target:  5'- -cGG-GCGCUGCGGGcgcGGGCGCGGGCg -3'
miRNA:   3'- aaCCgCGCGGCGUUCu--UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 32492 0.76 0.187708
Target:  5'- -gGGCGCGCC-CAAGuu-GCGCGGACa -3'
miRNA:   3'- aaCCGCGCGGcGUUCuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 43315 0.74 0.246555
Target:  5'- -cGGCGCGCgCGCGGGucGGCGUGGu- -3'
miRNA:   3'- aaCCGCGCG-GCGUUCuuCCGCGUCug -5'
6755 3' -59.5 NC_001875.2 + 124874 0.74 0.252602
Target:  5'- uUUGGCGCcCUGCAAGuacguguuGAGGCGCGGGu -3'
miRNA:   3'- -AACCGCGcGGCGUUC--------UUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 77261 0.74 0.265699
Target:  5'- -gGGCGCGCCGCcGGGcgaagcggccgccgcGGCGCAGuACa -3'
miRNA:   3'- aaCCGCGCGGCGuUCUu--------------CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 53916 0.73 0.271478
Target:  5'- -gGGCGCGCCGUu-GcGGGCGCGuuGGCg -3'
miRNA:   3'- aaCCGCGCGGCGuuCuUCCGCGU--CUG- -5'
6755 3' -59.5 NC_001875.2 + 77834 0.73 0.271478
Target:  5'- -cGcGCGCGCCGCAAGGccGUGCGcGACc -3'
miRNA:   3'- aaC-CGCGCGGCGUUCUucCGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 3092 0.73 0.298387
Target:  5'- -cGGCGUGCaCGCGccGGGGcgcggcucgcGGCGCAGACc -3'
miRNA:   3'- aaCCGCGCG-GCGU--UCUU----------CCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 24491 0.73 0.305429
Target:  5'- uUUGuGCGCGCaaaGCAAGAucGGCGCAcGCg -3'
miRNA:   3'- -AAC-CGCGCGg--CGUUCUu-CCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 88886 0.73 0.305429
Target:  5'- gUUGGCGCGCUGCGc--GGGCuGCuGACg -3'
miRNA:   3'- -AACCGCGCGGCGUucuUCCG-CGuCUG- -5'
6755 3' -59.5 NC_001875.2 + 79832 0.72 0.312599
Target:  5'- aUGGUgGUGCCaGCAAGAAGGgGCAGu- -3'
miRNA:   3'- aACCG-CGCGG-CGUUCUUCCgCGUCug -5'
6755 3' -59.5 NC_001875.2 + 33480 0.72 0.312599
Target:  5'- gUGGCGCGCCGCGcgcuGggGuGCGCcaACc -3'
miRNA:   3'- aACCGCGCGGCGUu---CuuC-CGCGucUG- -5'
6755 3' -59.5 NC_001875.2 + 103003 0.72 0.342543
Target:  5'- gUGGCGUGCgGCAAGugcGCuGCGGGCg -3'
miRNA:   3'- aACCGCGCGgCGUUCuucCG-CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 48515 0.72 0.342543
Target:  5'- uUUGGCGCGCCGCcc---GGCGCGcGCc -3'
miRNA:   3'- -AACCGCGCGGCGuucuuCCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 4 0.72 0.350346
Target:  5'- -gGGCGCGgCGaCAGGggGGUGCAc-- -3'
miRNA:   3'- aaCCGCGCgGC-GUUCuuCCGCGUcug -5'
6755 3' -59.5 NC_001875.2 + 12441 0.71 0.358273
Target:  5'- -cGuGCGCGCCGCGGuGGAcgccauucagcGGCaGCAGACg -3'
miRNA:   3'- aaC-CGCGCGGCGUU-CUU-----------CCG-CGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.