miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 4 0.72 0.350346
Target:  5'- -gGGCGCGgCGaCAGGggGGUGCAc-- -3'
miRNA:   3'- aaCCGCGCgGC-GUUCuuCCGCGUcug -5'
6755 3' -59.5 NC_001875.2 + 279 0.67 0.611907
Target:  5'- cUGGCGuCGCCGCAuGcuGGC-CAGGu -3'
miRNA:   3'- aACCGC-GCGGCGUuCuuCCGcGUCUg -5'
6755 3' -59.5 NC_001875.2 + 1497 0.69 0.491268
Target:  5'- -cGGUGCGUCaGCGAcGAcccugccuuuuGGGUGCGGGCg -3'
miRNA:   3'- aaCCGCGCGG-CGUU-CU-----------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 3048 0.68 0.550583
Target:  5'- -gGGCaGCG-CGUAAGAGGcGCGCAGcgGCg -3'
miRNA:   3'- aaCCG-CGCgGCGUUCUUC-CGCGUC--UG- -5'
6755 3' -59.5 NC_001875.2 + 3092 0.73 0.298387
Target:  5'- -cGGCGUGCaCGCGccGGGGcgcggcucgcGGCGCAGACc -3'
miRNA:   3'- aaCCGCGCG-GCGU--UCUU----------CCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 3867 0.66 0.65319
Target:  5'- gUGGCacggcagcaccGCGCCGcCAAGcuGG-GCAGGCu -3'
miRNA:   3'- aACCG-----------CGCGGC-GUUCuuCCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 5928 0.71 0.382802
Target:  5'- gUUGGguaGCGCCGCGcaGGuGGGCGCGGcCu -3'
miRNA:   3'- -AACCg--CGCGGCGU--UCuUCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 6973 0.66 0.684001
Target:  5'- -cGGCGCGCUGCuuGAca--GCGGGCa -3'
miRNA:   3'- aaCCGCGCGGCGuuCUuccgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 7010 0.67 0.605724
Target:  5'- gUGGCGCGCCaguugcuggacguaaGCGAGguGGcCGCGcGCu -3'
miRNA:   3'- aACCGCGCGG---------------CGUUCuuCC-GCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 10885 0.67 0.581078
Target:  5'- gUGGCGCuGCCGCGcaacguGuuGGCGCAa-- -3'
miRNA:   3'- aACCGCG-CGGCGUu-----CuuCCGCGUcug -5'
6755 3' -59.5 NC_001875.2 + 11965 0.69 0.471202
Target:  5'- -cGGCGCGuuGCAaagcacuggcgacGGcguuGGGCGCGGGu -3'
miRNA:   3'- aaCCGCGCggCGU-------------UCu---UCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 12441 0.71 0.358273
Target:  5'- -cGuGCGCGCCGCGGuGGAcgccauucagcGGCaGCAGACg -3'
miRNA:   3'- aaC-CGCGCGGCGUU-CUU-----------CCG-CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 18185 0.67 0.611907
Target:  5'- gUGGCgGUGCCGgc---GGGCGUAGGCg -3'
miRNA:   3'- aACCG-CGCGGCguucuUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 18276 0.66 0.694196
Target:  5'- aUGGCGCGCCGUgcgcGAccGCGCcguuGAUu -3'
miRNA:   3'- aACCGCGCGGCGuu--CUucCGCGu---CUG- -5'
6755 3' -59.5 NC_001875.2 + 19864 0.68 0.560699
Target:  5'- -cGGcCGCGUCGC-----GGCGCGGGCg -3'
miRNA:   3'- aaCC-GCGCGGCGuucuuCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 23824 0.67 0.619128
Target:  5'- -gGGCGCGCCGUgucucuggcGGGuGGGGUuaaagugcucgccaGCGGACg -3'
miRNA:   3'- aaCCGCGCGGCG---------UUC-UUCCG--------------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 24001 0.81 0.087998
Target:  5'- -cGcGCGCGUCGCAAGGcgcaccGGGCGCGGGCu -3'
miRNA:   3'- aaC-CGCGCGGCGUUCU------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 24491 0.73 0.305429
Target:  5'- uUUGuGCGCGCaaaGCAAGAucGGCGCAcGCg -3'
miRNA:   3'- -AAC-CGCGCGg--CGUUCUu-CCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 29768 0.66 0.684001
Target:  5'- -gGGCGUcgccauguacgGCCGCGGGuggacGGGCGUgucAGGCu -3'
miRNA:   3'- aaCCGCG-----------CGGCGUUCu----UCCGCG---UCUG- -5'
6755 3' -59.5 NC_001875.2 + 31913 0.68 0.550583
Target:  5'- cUUGGcCGCGCUGCAccgc-GCGCGGGCc -3'
miRNA:   3'- -AACC-GCGCGGCGUucuucCGCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.