miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 31913 0.68 0.550583
Target:  5'- cUUGGcCGCGCUGCAccgc-GCGCGGGCc -3'
miRNA:   3'- -AACC-GCGCGGCGUucuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 117357 0.7 0.444196
Target:  5'- -cGGCGgGCCGgcuggccguCGGGGAGGCGCcGAg -3'
miRNA:   3'- aaCCGCgCGGC---------GUUCUUCCGCGuCUg -5'
6755 3' -59.5 NC_001875.2 + 43030 0.69 0.46273
Target:  5'- --cGCGCGCCGCGGc---GCGCGGGCu -3'
miRNA:   3'- aacCGCGCGGCGUUcuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 11965 0.69 0.471202
Target:  5'- -cGGCGCGuuGCAaagcacuggcgacGGcguuGGGCGCGGGu -3'
miRNA:   3'- aaCCGCGCggCGU-------------UCu---UCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 39327 0.69 0.472148
Target:  5'- -cGGCGUGCgCGCGcuGcAGGCGCAGcCu -3'
miRNA:   3'- aaCCGCGCG-GCGUu-CuUCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 122132 0.69 0.491268
Target:  5'- -gGGCGCGgCGCGGccGGcGCGCAcGACg -3'
miRNA:   3'- aaCCGCGCgGCGUUcuUC-CGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 116914 0.69 0.491268
Target:  5'- --cGCGCGCgGCGGGu-GGCGCAcaauGACg -3'
miRNA:   3'- aacCGCGCGgCGUUCuuCCGCGU----CUG- -5'
6755 3' -59.5 NC_001875.2 + 85226 0.69 0.49999
Target:  5'- -cGGUaGCGCCGCAugucgacgagcgcGGGuuccgcgcucGGCGCGGACa -3'
miRNA:   3'- aaCCG-CGCGGCGU-------------UCUu---------CCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 97882 0.68 0.520596
Target:  5'- --uGCGCGCCGCAcGGGcacguugcGGGCGUcGGCg -3'
miRNA:   3'- aacCGCGCGGCGU-UCU--------UCCGCGuCUG- -5'
6755 3' -59.5 NC_001875.2 + 110832 0.7 0.438717
Target:  5'- cUGGUGCGCCGCG-GAcuguauuugucguacGGGCaguugcgcuGCGGGCa -3'
miRNA:   3'- aACCGCGCGGCGUuCU---------------UCCG---------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 5928 0.71 0.382802
Target:  5'- gUUGGguaGCGCCGCGcaGGuGGGCGCGGcCu -3'
miRNA:   3'- -AACCg--CGCGGCGU--UCuUCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 12441 0.71 0.358273
Target:  5'- -cGuGCGCGCCGCGGuGGAcgccauucagcGGCaGCAGACg -3'
miRNA:   3'- aaC-CGCGCGGCGUU-CUU-----------CCG-CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 72556 0.76 0.178436
Target:  5'- -cGG-GCGCUGCGGGcgcGGGCGCGGGCg -3'
miRNA:   3'- aaCCgCGCGGCGUUCu--UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 43315 0.74 0.246555
Target:  5'- -cGGCGCGCgCGCGGGucGGCGUGGu- -3'
miRNA:   3'- aaCCGCGCG-GCGUUCuuCCGCGUCug -5'
6755 3' -59.5 NC_001875.2 + 124874 0.74 0.252602
Target:  5'- uUUGGCGCcCUGCAAGuacguguuGAGGCGCGGGu -3'
miRNA:   3'- -AACCGCGcGGCGUUC--------UUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 53916 0.73 0.271478
Target:  5'- -gGGCGCGCCGUu-GcGGGCGCGuuGGCg -3'
miRNA:   3'- aaCCGCGCGGCGuuCuUCCGCGU--CUG- -5'
6755 3' -59.5 NC_001875.2 + 24491 0.73 0.305429
Target:  5'- uUUGuGCGCGCaaaGCAAGAucGGCGCAcGCg -3'
miRNA:   3'- -AAC-CGCGCGg--CGUUCUu-CCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 33480 0.72 0.312599
Target:  5'- gUGGCGCGCCGCGcgcuGggGuGCGCcaACc -3'
miRNA:   3'- aACCGCGCGGCGUu---CuuC-CGCGucUG- -5'
6755 3' -59.5 NC_001875.2 + 79832 0.72 0.312599
Target:  5'- aUGGUgGUGCCaGCAAGAAGGgGCAGu- -3'
miRNA:   3'- aACCG-CGCGG-CGUUCUUCCgCGUCug -5'
6755 3' -59.5 NC_001875.2 + 48515 0.72 0.342543
Target:  5'- uUUGGCGCGCCGCcc---GGCGCGcGCc -3'
miRNA:   3'- -AACCGCGCGGCGuucuuCCGCGUcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.