miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 102302 1.07 0.001091
Target:  5'- aUUGGCGCGCCGCAAGAAGGCGCAGACa -3'
miRNA:   3'- -AACCGCGCGGCGUUCUUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 124781 0.69 0.481663
Target:  5'- gUGGCGuCGCCGCAgcGGAaccaggccgacaAGcGCGCGGcCa -3'
miRNA:   3'- aACCGC-GCGGCGU--UCU------------UC-CGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 1497 0.69 0.491268
Target:  5'- -cGGUGCGUCaGCGAcGAcccugccuuuuGGGUGCGGGCg -3'
miRNA:   3'- aaCCGCGCGG-CGUU-CU-----------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 18276 0.66 0.694196
Target:  5'- aUGGCGCGCCGUgcgcGAccGCGCcguuGAUu -3'
miRNA:   3'- aACCGCGCGGCGuu--CUucCGCGu---CUG- -5'
6755 3' -59.5 NC_001875.2 + 77261 0.74 0.265699
Target:  5'- -gGGCGCGCCGCcGGGcgaagcggccgccgcGGCGCAGuACa -3'
miRNA:   3'- aaCCGCGCGGCGuUCUu--------------CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 77834 0.73 0.271478
Target:  5'- -cGcGCGCGCCGCAAGGccGUGCGcGACc -3'
miRNA:   3'- aaC-CGCGCGGCGUUCUucCGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 88886 0.73 0.305429
Target:  5'- gUUGGCGCGCUGCGc--GGGCuGCuGACg -3'
miRNA:   3'- -AACCGCGCGGCGUucuUCCG-CGuCUG- -5'
6755 3' -59.5 NC_001875.2 + 103003 0.72 0.342543
Target:  5'- gUGGCGUGCgGCAAGugcGCuGCGGGCg -3'
miRNA:   3'- aACCGCGCGgCGUUCuucCG-CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 81067 0.71 0.388683
Target:  5'- aUGGUGCGCCGCGacgAGAAGaGcCGCguguucauagucaaAGACg -3'
miRNA:   3'- aACCGCGCGGCGU---UCUUC-C-GCG--------------UCUG- -5'
6755 3' -59.5 NC_001875.2 + 80971 0.69 0.481663
Target:  5'- gUGGcCGCGCCGCccgagcaaAAGcugcugcugaaaAAGGCGCGcGACg -3'
miRNA:   3'- aACC-GCGCGGCG--------UUC------------UUCCGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 112206 0.7 0.444196
Target:  5'- gUUGGggucuaCGCGCUGCAGcGAGGCGUGGAa -3'
miRNA:   3'- -AACC------GCGCGGCGUUcUUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 59219 0.71 0.380299
Target:  5'- uUUGGCGUGCCGCAGGccguaaacaaccugGAGGCcCAaGCg -3'
miRNA:   3'- -AACCGCGCGGCGUUC--------------UUCCGcGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 24001 0.81 0.087998
Target:  5'- -cGcGCGCGUCGCAAGGcgcaccGGGCGCGGGCu -3'
miRNA:   3'- aaC-CGCGCGGCGUUCU------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 64298 0.69 0.472148
Target:  5'- --cGCGUGCUGCAAGgcGGagcucCGCAGAUa -3'
miRNA:   3'- aacCGCGCGGCGUUCuuCC-----GCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 120067 0.78 0.127554
Target:  5'- -aGGCGCGCCGCGAGGuuGGCGauGACg -3'
miRNA:   3'- aaCCGCGCGGCGUUCUu-CCGCguCUG- -5'
6755 3' -59.5 NC_001875.2 + 4 0.72 0.350346
Target:  5'- -gGGCGCGgCGaCAGGggGGUGCAc-- -3'
miRNA:   3'- aaCCGCGCgGC-GUUCuuCCGCGUcug -5'
6755 3' -59.5 NC_001875.2 + 66115 0.69 0.480707
Target:  5'- -cGGCGgGCgGCGAGgcGGCGCcgcccgcGGAa -3'
miRNA:   3'- aaCCGCgCGgCGUUCuuCCGCG-------UCUg -5'
6755 3' -59.5 NC_001875.2 + 67247 0.69 0.491268
Target:  5'- -cGGCGUGCCGUugcAGAAGGUGgCGcGCu -3'
miRNA:   3'- aaCCGCGCGGCGu--UCUUCCGC-GUcUG- -5'
6755 3' -59.5 NC_001875.2 + 32492 0.76 0.187708
Target:  5'- -gGGCGCGCC-CAAGuu-GCGCGGACa -3'
miRNA:   3'- aaCCGCGCGGcGUUCuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 3092 0.73 0.298387
Target:  5'- -cGGCGUGCaCGCGccGGGGcgcggcucgcGGCGCAGACc -3'
miRNA:   3'- aaCCGCGCG-GCGU--UCUU----------CCGCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.