miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 32492 0.76 0.187708
Target:  5'- -gGGCGCGCC-CAAGuu-GCGCGGACa -3'
miRNA:   3'- aaCCGCGCGGcGUUCuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 33480 0.72 0.312599
Target:  5'- gUGGCGCGCCGCGcgcuGggGuGCGCcaACc -3'
miRNA:   3'- aACCGCGCGGCGUu---CuuC-CGCGucUG- -5'
6755 3' -59.5 NC_001875.2 + 34915 0.66 0.684001
Target:  5'- -aGGCGCGCCaGUuuuuuGGGUGCGG-Cg -3'
miRNA:   3'- aaCCGCGCGG-CGuucu-UCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 34998 0.67 0.616033
Target:  5'- gUGcGCGCGCCGuCAAacAAGGCGCGcauaacguccagcuuGACg -3'
miRNA:   3'- aAC-CGCGCGGC-GUUc-UUCCGCGU---------------CUG- -5'
6755 3' -59.5 NC_001875.2 + 37084 0.67 0.601605
Target:  5'- uUUGGCGgacgacacCGCCGCGuGGGuGUGCGGGCg -3'
miRNA:   3'- -AACCGC--------GCGGCGUuCUUcCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 37415 0.66 0.65319
Target:  5'- -cGGCGCGUgG-AAGAGgccguGGCGCAGuCg -3'
miRNA:   3'- aaCCGCGCGgCgUUCUU-----CCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 37880 0.67 0.581078
Target:  5'- -cGGCGgGCCGCGccagcGGcuugcuGGCGCGGcACu -3'
miRNA:   3'- aaCCGCgCGGCGU-----UCuu----CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 38460 0.68 0.570867
Target:  5'- -cGGCGCG-CGCuAGAAuuGGUGCAGcGCg -3'
miRNA:   3'- aaCCGCGCgGCGuUCUU--CCGCGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 39327 0.69 0.472148
Target:  5'- -cGGCGUGCgCGCGcuGcAGGCGCAGcCu -3'
miRNA:   3'- aaCCGCGCG-GCGUu-CuUCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 39638 0.67 0.591327
Target:  5'- aUGGCGCGCagcgaaccgcgCGCGAGuuuGGGCcgGCGGcGCg -3'
miRNA:   3'- aACCGCGCG-----------GCGUUCu--UCCG--CGUC-UG- -5'
6755 3' -59.5 NC_001875.2 + 41603 0.68 0.550583
Target:  5'- -aGGCGCgGgCGC----GGGCGCGGGCa -3'
miRNA:   3'- aaCCGCG-CgGCGuucuUCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 41817 0.68 0.527539
Target:  5'- aUGGCGCGCgGCGagcucuugaggucgGGGuugauuuuguugAGGCGCuuGACg -3'
miRNA:   3'- aACCGCGCGgCGU--------------UCU------------UCCGCGu-CUG- -5'
6755 3' -59.5 NC_001875.2 + 42859 0.78 0.130936
Target:  5'- -cGGCGCGCCGC----AGGCGCAGGu -3'
miRNA:   3'- aaCCGCGCGGCGuucuUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 43030 0.69 0.46273
Target:  5'- --cGCGCGCCGCGGc---GCGCGGGCu -3'
miRNA:   3'- aacCGCGCGGCGUUcuucCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 43315 0.74 0.246555
Target:  5'- -cGGCGCGCgCGCGGGucGGCGUGGu- -3'
miRNA:   3'- aaCCGCGCG-GCGUUCuuCCGCGUCug -5'
6755 3' -59.5 NC_001875.2 + 46032 0.67 0.605724
Target:  5'- cUGGC-CGCCGCGgaaaugcuucacaacAuGAAcGGCGCAGAa -3'
miRNA:   3'- aACCGcGCGGCGU---------------U-CUU-CCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 47683 0.67 0.600576
Target:  5'- -cGGCGCGCCGCGcguuucucaacgcGGGGcaaGUGCAcGACu -3'
miRNA:   3'- aaCCGCGCGGCGU-------------UCUUc--CGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 48035 0.67 0.611907
Target:  5'- gUGGC-CGCCGCccacaggcacGAGGGCGCGcGCu -3'
miRNA:   3'- aACCGcGCGGCGuu--------CUUCCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 48515 0.72 0.342543
Target:  5'- uUUGGCGCGCCGCcc---GGCGCGcGCc -3'
miRNA:   3'- -AACCGCGCGGCGuucuuCCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 49543 0.67 0.591327
Target:  5'- --uGCGCGCCGCGccAGGGCGUcguguuguGGAUg -3'
miRNA:   3'- aacCGCGCGGCGUucUUCCGCG--------UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.