miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 130821 0.66 0.684001
Target:  5'- -gGGCcccgccacGCGCUGCAAGAacGGGCccGCAG-Ca -3'
miRNA:   3'- aaCCG--------CGCGGCGUUCU--UCCG--CGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 127329 0.68 0.564761
Target:  5'- -cGGUGCGCCGCuuuccgcagcGGaGCAGACg -3'
miRNA:   3'- aaCCGCGCGGCGuucuu-----CCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 126523 0.67 0.591327
Target:  5'- -cGGCGagcagguaGCgCGCAauGGAguggucgucGGGCGCGGGCa -3'
miRNA:   3'- aaCCGCg-------CG-GCGU--UCU---------UCCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 126012 0.66 0.663489
Target:  5'- -gGGCGCGUC-CAGaucGgcGGCGCuGGCa -3'
miRNA:   3'- aaCCGCGCGGcGUU---CuuCCGCGuCUG- -5'
6755 3' -59.5 NC_001875.2 + 124874 0.74 0.252602
Target:  5'- uUUGGCGCcCUGCAAGuacguguuGAGGCGCGGGu -3'
miRNA:   3'- -AACCGCGcGGCGUUC--------UUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 124781 0.69 0.481663
Target:  5'- gUGGCGuCGCCGCAgcGGAaccaggccgacaAGcGCGCGGcCa -3'
miRNA:   3'- aACCGC-GCGGCGU--UCU------------UC-CGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 122132 0.69 0.491268
Target:  5'- -gGGCGCGgCGCGGccGGcGCGCAcGACg -3'
miRNA:   3'- aaCCGCGCgGCGUUcuUC-CGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 120067 0.78 0.127554
Target:  5'- -aGGCGCGCCGCGAGGuuGGCGauGACg -3'
miRNA:   3'- aaCCGCGCGGCGUUCUu-CCGCguCUG- -5'
6755 3' -59.5 NC_001875.2 + 119414 0.7 0.408422
Target:  5'- -cGGCGCGCaCGCAAcGGccugcuuGGCGCGcGGCa -3'
miRNA:   3'- aaCCGCGCG-GCGUU-CUu------CCGCGU-CUG- -5'
6755 3' -59.5 NC_001875.2 + 118518 0.68 0.570867
Target:  5'- -cGGUuuGCGCUGCAAguggaacuGAAGGCGCucaacGGCg -3'
miRNA:   3'- aaCCG--CGCGGCGUU--------CUUCCGCGu----CUG- -5'
6755 3' -59.5 NC_001875.2 + 117357 0.7 0.444196
Target:  5'- -cGGCGgGCCGgcuggccguCGGGGAGGCGCcGAg -3'
miRNA:   3'- aaCCGCgCGGC---------GUUCUUCCGCGuCUg -5'
6755 3' -59.5 NC_001875.2 + 117095 0.66 0.663489
Target:  5'- -aGGaaaCGCGUCGCAAacccaacAGGGCGCGGAa -3'
miRNA:   3'- aaCC---GCGCGGCGUUc------UUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 116914 0.69 0.491268
Target:  5'- --cGCGCGCgGCGGGu-GGCGCAcaauGACg -3'
miRNA:   3'- aacCGCGCGgCGUUCuuCCGCGU----CUG- -5'
6755 3' -59.5 NC_001875.2 + 113615 0.66 0.663489
Target:  5'- -cGGCGgGCCGCGgcggcaAGAGcGGCGaCGG-Cg -3'
miRNA:   3'- aaCCGCgCGGCGU------UCUU-CCGC-GUCuG- -5'
6755 3' -59.5 NC_001875.2 + 112206 0.7 0.444196
Target:  5'- gUUGGggucuaCGCGCUGCAGcGAGGCGUGGAa -3'
miRNA:   3'- -AACC------GCGCGGCGUUcUUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 112060 0.67 0.622225
Target:  5'- -cGGcCGCGUCGUcuuccAGcAGGuGCGCAGACa -3'
miRNA:   3'- aaCC-GCGCGGCGu----UC-UUC-CGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 110914 0.68 0.540523
Target:  5'- aUGGUGCucagGCUGCGAGggGGaaaCGGGCu -3'
miRNA:   3'- aACCGCG----CGGCGUUCuuCCgc-GUCUG- -5'
6755 3' -59.5 NC_001875.2 + 110832 0.7 0.438717
Target:  5'- cUGGUGCGCCGCG-GAcuguauuugucguacGGGCaguugcgcuGCGGGCa -3'
miRNA:   3'- aACCGCGCGGCGUuCU---------------UCCG---------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 105969 0.68 0.570867
Target:  5'- cUUGG-GCGCCGCAAu--GG-GCAGGCu -3'
miRNA:   3'- -AACCgCGCGGCGUUcuuCCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 104132 0.66 0.663489
Target:  5'- --uGCGCGCCGUggGGcccauucccguGGCGaUAGACg -3'
miRNA:   3'- aacCGCGCGGCGuuCUu----------CCGC-GUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.