miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 37123 0.67 0.780309
Target:  5'- --cGCCGCgccggcguuuGCGUCUUucCGCGUGCGCa -3'
miRNA:   3'- uuuCGGCG----------CGCAGAGccGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 36428 0.67 0.780309
Target:  5'- --cGCCGCgGUGUCg-GGCugGUGCu- -3'
miRNA:   3'- uuuCGGCG-CGCAGagCCGugCAUGug -5'
6755 5' -56.9 NC_001875.2 + 26970 0.67 0.780309
Target:  5'- cAAGGCCGUucucgauuuGCG-CUCGGCcACGUugAg -3'
miRNA:   3'- -UUUCGGCG---------CGCaGAGCCG-UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 84560 0.67 0.780309
Target:  5'- uGAGCUccacgucgaGCGCGUcCUCGgucgugacccGCugGUGCACg -3'
miRNA:   3'- uUUCGG---------CGCGCA-GAGC----------CGugCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 89910 0.67 0.776541
Target:  5'- --cGCCGCGCauauaaagggCGGCGCGUcCGCg -3'
miRNA:   3'- uuuCGGCGCGcaga------GCCGUGCAuGUG- -5'
6755 5' -56.9 NC_001875.2 + 79624 0.67 0.77085
Target:  5'- -cAGUCGCGCGUCcaguuugcaCGGCGCGcaguCGCc -3'
miRNA:   3'- uuUCGGCGCGCAGa--------GCCGUGCau--GUG- -5'
6755 5' -56.9 NC_001875.2 + 21861 0.67 0.769897
Target:  5'- --cGaCCGCGCGUacgUGGCAaacuuguacuuguCGUACACg -3'
miRNA:   3'- uuuC-GGCGCGCAga-GCCGU-------------GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 112380 0.67 0.761264
Target:  5'- cAGGCUGCGCGaaauuUCgcaguuaaagCGGCGCGgcCGCa -3'
miRNA:   3'- uUUCGGCGCGC-----AGa---------GCCGUGCauGUG- -5'
6755 5' -56.9 NC_001875.2 + 35739 0.67 0.761264
Target:  5'- -cGGCCGCGuCGgucagCUCGcGCuucauuuuagucACGUGCACc -3'
miRNA:   3'- uuUCGGCGC-GCa----GAGC-CG------------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 31523 0.67 0.761264
Target:  5'- gAAGGCgGCGgGUCguugaaCGGCACcacuUGCACg -3'
miRNA:   3'- -UUUCGgCGCgCAGa-----GCCGUGc---AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 57721 0.67 0.761264
Target:  5'- --cGUCGCGCGacaccgcaaagUCgcgCGGCGCGUAguCGCg -3'
miRNA:   3'- uuuCGGCGCGC-----------AGa--GCCGUGCAU--GUG- -5'
6755 5' -56.9 NC_001875.2 + 99922 0.67 0.761264
Target:  5'- cGGGCCGCGCG-CgCGGUGCa-GCGCg -3'
miRNA:   3'- uUUCGGCGCGCaGaGCCGUGcaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 78229 0.67 0.761264
Target:  5'- --cGCUgagGCGCGUCagaUUGuGCugGUGCACg -3'
miRNA:   3'- uuuCGG---CGCGCAG---AGC-CGugCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 82166 0.67 0.761264
Target:  5'- -uGGCCGa-CGgg-CGGUACGUGCGCa -3'
miRNA:   3'- uuUCGGCgcGCagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 21261 0.67 0.761264
Target:  5'- cAGGCgCGCGCG-CggcgCGGCuACGaGCACg -3'
miRNA:   3'- uUUCG-GCGCGCaGa---GCCG-UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 114961 0.67 0.752535
Target:  5'- --cGCUGCGCGUacgcauacaaccaGGgGCGUACACg -3'
miRNA:   3'- uuuCGGCGCGCAgag----------CCgUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 88813 0.67 0.75156
Target:  5'- -uAGCC-CGCGcCcgCGGCGCGcgGCACu -3'
miRNA:   3'- uuUCGGcGCGCaGa-GCCGUGCa-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 100990 0.67 0.75156
Target:  5'- cAGGCCGCgGCGUUUgCGGCG-GUuuuGCGCa -3'
miRNA:   3'- uUUCGGCG-CGCAGA-GCCGUgCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 65982 0.67 0.75156
Target:  5'- uGGGCCGCG-GUCUUGugauCGUACGCg -3'
miRNA:   3'- uUUCGGCGCgCAGAGCcgu-GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 57308 0.67 0.75156
Target:  5'- -cGGgCGCGCGUCgUCGGCG---ACGCa -3'
miRNA:   3'- uuUCgGCGCGCAG-AGCCGUgcaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.