Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6755 | 5' | -56.9 | NC_001875.2 | + | 73125 | 0.66 | 0.814048 |
Target: 5'- uAAAGCCGUcgaauucGUGUacacaaaCUCGGCccucaugACGUACACg -3' miRNA: 3'- -UUUCGGCG-------CGCA-------GAGCCG-------UGCAUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 125339 | 0.66 | 0.807829 |
Target: 5'- -cGGCgGCcaGCGUgUUGGCGCG-GCACu -3' miRNA: 3'- uuUCGgCG--CGCAgAGCCGUGCaUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 66188 | 0.66 | 0.807829 |
Target: 5'- -uAGCCGCGUGUCgUCGGgAcCGUGu-- -3' miRNA: 3'- uuUCGGCGCGCAG-AGCCgU-GCAUgug -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 53915 | 0.66 | 0.807829 |
Target: 5'- -uGGgCGCGcCGUUgcgGGCGCGUugGCg -3' miRNA: 3'- uuUCgGCGC-GCAGag-CCGUGCAugUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 35891 | 0.66 | 0.807829 |
Target: 5'- uGAGCCgGCGCGUUgccagcuccagCGGguUGUACAg -3' miRNA: 3'- uUUCGG-CGCGCAGa----------GCCguGCAUGUg -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 100844 | 0.66 | 0.80514 |
Target: 5'- -cGGCCGCGCGcgcguaaucuugcuUUUUGaGCGCGagGCGCa -3' miRNA: 3'- uuUCGGCGCGC--------------AGAGC-CGUGCa-UGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 114031 | 0.66 | 0.802436 |
Target: 5'- -cGGCCGCGCgGUCcagaugguagcacgCGggcuGCGCGUACGCc -3' miRNA: 3'- uuUCGGCGCG-CAGa-------------GC----CGUGCAUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 21563 | 0.66 | 0.798808 |
Target: 5'- cGGGCCGCGCGauauuagcgUGGaCGCGUACGu -3' miRNA: 3'- uUUCGGCGCGCaga------GCC-GUGCAUGUg -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 45225 | 0.66 | 0.798808 |
Target: 5'- --cGUCGCGCG-CgaacaggCGGCGCGU-CGCc -3' miRNA: 3'- uuuCGGCGCGCaGa------GCCGUGCAuGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 115946 | 0.66 | 0.798808 |
Target: 5'- cAAAGUagCGCGgGUCuUCGGCAa-UGCACg -3' miRNA: 3'- -UUUCG--GCGCgCAG-AGCCGUgcAUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 102616 | 0.66 | 0.798808 |
Target: 5'- gGAAGCCGCGCGUUUgcGCACcuuUGCGg -3' miRNA: 3'- -UUUCGGCGCGCAGAgcCGUGc--AUGUg -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 42692 | 0.66 | 0.798808 |
Target: 5'- cGAAaCCGCGCGgcgCgCGGUuuCGUACGCa -3' miRNA: 3'- -UUUcGGCGCGCa--GaGCCGu-GCAUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 7041 | 0.67 | 0.789631 |
Target: 5'- -uGGCCGCGCGcuUgUCGGCcugguuccgcuGCGgcgACGCc -3' miRNA: 3'- uuUCGGCGCGC--AgAGCCG-----------UGCa--UGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 23799 | 0.67 | 0.789631 |
Target: 5'- --cGCCGaCGUGUCgcuccgCGGCGuCGgGCGCg -3' miRNA: 3'- uuuCGGC-GCGCAGa-----GCCGU-GCaUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 97738 | 0.67 | 0.789631 |
Target: 5'- cGAGCgCGCGCG-CUCGuGCAaccccgGCACg -3' miRNA: 3'- uUUCG-GCGCGCaGAGC-CGUgca---UGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 100705 | 0.67 | 0.784055 |
Target: 5'- --cGCgGCGCGUuaagcaugcacauugCUgCGGCGCGcgGCACg -3' miRNA: 3'- uuuCGgCGCGCA---------------GA-GCCGUGCa-UGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 9529 | 0.67 | 0.784055 |
Target: 5'- gGAAGCCGCGCccgauaggacgCGGCugGUGaGCg -3' miRNA: 3'- -UUUCGGCGCGcaga-------GCCGugCAUgUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 74041 | 0.67 | 0.781247 |
Target: 5'- --uGCCGCGCuaaaaaccgcgcugCUCGGCGuggauUGUGCGCg -3' miRNA: 3'- uuuCGGCGCGca------------GAGCCGU-----GCAUGUG- -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 26970 | 0.67 | 0.780309 |
Target: 5'- cAAGGCCGUucucgauuuGCG-CUCGGCcACGUugAg -3' miRNA: 3'- -UUUCGGCG---------CGCaGAGCCG-UGCAugUg -5' |
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6755 | 5' | -56.9 | NC_001875.2 | + | 42653 | 0.67 | 0.780309 |
Target: 5'- -cAGCCGgucCGCGUCgaGGCugauuugcgccaGCGUGCACg -3' miRNA: 3'- uuUCGGC---GCGCAGagCCG------------UGCAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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