miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 114031 0.66 0.802436
Target:  5'- -cGGCCGCGCgGUCcagaugguagcacgCGggcuGCGCGUACGCc -3'
miRNA:   3'- uuUCGGCGCG-CAGa-------------GC----CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 73125 0.66 0.814048
Target:  5'- uAAAGCCGUcgaauucGUGUacacaaaCUCGGCccucaugACGUACACg -3'
miRNA:   3'- -UUUCGGCG-------CGCA-------GAGCCG-------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 80862 0.66 0.825373
Target:  5'- cAAGCUGaGCGaCUCGGCGCGcGC-Ca -3'
miRNA:   3'- uUUCGGCgCGCaGAGCCGUGCaUGuG- -5'
6755 5' -56.9 NC_001875.2 + 57523 0.66 0.825373
Target:  5'- --cGcCCGUGCuGUC-CGGCGCcUGCGCg -3'
miRNA:   3'- uuuC-GGCGCG-CAGaGCCGUGcAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 125339 0.66 0.807829
Target:  5'- -cGGCgGCcaGCGUgUUGGCGCG-GCACu -3'
miRNA:   3'- uuUCGgCG--CGCAgAGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 115946 0.66 0.798808
Target:  5'- cAAAGUagCGCGgGUCuUCGGCAa-UGCACg -3'
miRNA:   3'- -UUUCG--GCGCgCAG-AGCCGUgcAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 131767 0.66 0.833878
Target:  5'- cGGGCgGCGCGUCaUUGGUGuCGUuCGCc -3'
miRNA:   3'- uUUCGgCGCGCAG-AGCCGU-GCAuGUG- -5'
6755 5' -56.9 NC_001875.2 + 45225 0.66 0.798808
Target:  5'- --cGUCGCGCG-CgaacaggCGGCGCGU-CGCc -3'
miRNA:   3'- uuuCGGCGCGCaGa------GCCGUGCAuGUG- -5'
6755 5' -56.9 NC_001875.2 + 42692 0.66 0.798808
Target:  5'- cGAAaCCGCGCGgcgCgCGGUuuCGUACGCa -3'
miRNA:   3'- -UUUcGGCGCGCa--GaGCCGu-GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42295 0.66 0.828797
Target:  5'- cAGGCUGCGCGUgcguaUagacgaucccgccuaUCGGCGCG-ACGCc -3'
miRNA:   3'- uUUCGGCGCGCA-----G---------------AGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 100844 0.66 0.80514
Target:  5'- -cGGCCGCGCGcgcguaaucuugcuUUUUGaGCGCGagGCGCa -3'
miRNA:   3'- uuUCGGCGCGC--------------AGAGC-CGUGCa-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 21563 0.66 0.798808
Target:  5'- cGGGCCGCGCGauauuagcgUGGaCGCGUACGu -3'
miRNA:   3'- uUUCGGCGCGCaga------GCC-GUGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 21261 0.67 0.761264
Target:  5'- cAGGCgCGCGCG-CggcgCGGCuACGaGCACg -3'
miRNA:   3'- uUUCG-GCGCGCaGa---GCCG-UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 57721 0.67 0.761264
Target:  5'- --cGUCGCGCGacaccgcaaagUCgcgCGGCGCGUAguCGCg -3'
miRNA:   3'- uuuCGGCGCGC-----------AGa--GCCGUGCAU--GUG- -5'
6755 5' -56.9 NC_001875.2 + 26970 0.67 0.780309
Target:  5'- cAAGGCCGUucucgauuuGCG-CUCGGCcACGUugAg -3'
miRNA:   3'- -UUUCGGCG---------CGCaGAGCCG-UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 79624 0.67 0.77085
Target:  5'- -cAGUCGCGCGUCcaguuugcaCGGCGCGcaguCGCc -3'
miRNA:   3'- uuUCGGCGCGCAGa--------GCCGUGCau--GUG- -5'
6755 5' -56.9 NC_001875.2 + 37123 0.67 0.780309
Target:  5'- --cGCCGCgccggcguuuGCGUCUUucCGCGUGCGCa -3'
miRNA:   3'- uuuCGGCG----------CGCAGAGccGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42653 0.67 0.780309
Target:  5'- -cAGCCGgucCGCGUCgaGGCugauuugcgccaGCGUGCACg -3'
miRNA:   3'- uuUCGGC---GCGCAGagCCG------------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 74041 0.67 0.781247
Target:  5'- --uGCCGCGCuaaaaaccgcgcugCUCGGCGuggauUGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGca------------GAGCCGU-----GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 100705 0.67 0.784055
Target:  5'- --cGCgGCGCGUuaagcaugcacauugCUgCGGCGCGcgGCACg -3'
miRNA:   3'- uuuCGgCGCGCA---------------GA-GCCGUGCa-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.