miRNA display CGI


Results 21 - 40 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 122534 0.72 0.507171
Target:  5'- --cGCCGauuGCGUC-CGGCGCGcagUGCACa -3'
miRNA:   3'- uuuCGGCg--CGCAGaGCCGUGC---AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 102252 0.71 0.517048
Target:  5'- aGAAGCCGCGgGUgagcgCUCGcGCGCGuUGCAg -3'
miRNA:   3'- -UUUCGGCGCgCA-----GAGC-CGUGC-AUGUg -5'
6755 5' -56.9 NC_001875.2 + 89773 0.71 0.527001
Target:  5'- -uGGUCGgcgaCGCG-CUCGuGCACGUGCGCg -3'
miRNA:   3'- uuUCGGC----GCGCaGAGC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 124981 0.71 0.531002
Target:  5'- --cGCCGCGCGUCcgcuuuacgugcaagUUGGCGuCGgGCACg -3'
miRNA:   3'- uuuCGGCGCGCAG---------------AGCCGU-GCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42045 0.71 0.547114
Target:  5'- --uGCCGCccGCGcugcgUUCGcGCACGUGCACg -3'
miRNA:   3'- uuuCGGCG--CGCa----GAGC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 86950 0.71 0.547114
Target:  5'- cGAGCCGCcaGCGUCcaagCGGCGCaaaGCGCa -3'
miRNA:   3'- uUUCGGCG--CGCAGa---GCCGUGca-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 43110 0.71 0.557262
Target:  5'- cGGGCCGUGCucGUuaaaCUCGGCGCGcaUGCGCc -3'
miRNA:   3'- uUUCGGCGCG--CA----GAGCCGUGC--AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 125181 0.71 0.557262
Target:  5'- -cGGCCguugcccagauuGCGCGUgCUgGGCACGUuuaGCACg -3'
miRNA:   3'- uuUCGG------------CGCGCA-GAgCCGUGCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 5163 0.71 0.567464
Target:  5'- uGAGCCGCaaCGUgCUCGucaGCGCGUGCAUg -3'
miRNA:   3'- uUUCGGCGc-GCA-GAGC---CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 33235 0.71 0.567464
Target:  5'- --cGCCggGCGcCGUUUCGGCGCG-GCGCu -3'
miRNA:   3'- uuuCGG--CGC-GCAGAGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 43027 0.7 0.577712
Target:  5'- --uGCCGCGCGcCgCGGCGCGcGgGCu -3'
miRNA:   3'- uuuCGGCGCGCaGaGCCGUGCaUgUG- -5'
6755 5' -56.9 NC_001875.2 + 21751 0.7 0.577712
Target:  5'- -uGGCCGCGCGUggCGGCcuccacgcgcaGCGUcucuGCGCg -3'
miRNA:   3'- uuUCGGCGCGCAgaGCCG-----------UGCA----UGUG- -5'
6755 5' -56.9 NC_001875.2 + 33942 0.7 0.58697
Target:  5'- -cAGCuugCGcCGCGUUUCGGCgucuacaACGUGCACg -3'
miRNA:   3'- uuUCG---GC-GCGCAGAGCCG-------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 30719 0.7 0.597288
Target:  5'- cGAGCa--GCGUCaagguaacuggaaUUGGCACGUGCACg -3'
miRNA:   3'- uUUCGgcgCGCAG-------------AGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 65782 0.7 0.597288
Target:  5'- cGAGCaCGCGCGcggCgUCGGCGCGcggugccUGCGCg -3'
miRNA:   3'- uUUCG-GCGCGCa--G-AGCCGUGC-------AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 128480 0.7 0.598321
Target:  5'- -cAGCCGCGCGuuaUCUCauGCGCGUgaccggACACg -3'
miRNA:   3'- uuUCGGCGCGC---AGAGc-CGUGCA------UGUG- -5'
6755 5' -56.9 NC_001875.2 + 119902 0.7 0.598321
Target:  5'- -cGGUCGCGCGcacagUCGGCGCGccGCGCg -3'
miRNA:   3'- uuUCGGCGCGCag---AGCCGUGCa-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 90889 0.7 0.598321
Target:  5'- -uGGCCGgggcCGCGUCg-GGCAUGUugACg -3'
miRNA:   3'- uuUCGGC----GCGCAGagCCGUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 22815 0.7 0.608668
Target:  5'- -uGGCCGUGCgGUCcgacggcaccgUCGGCggcacgACGUACGCg -3'
miRNA:   3'- uuUCGGCGCG-CAG-----------AGCCG------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 1161 0.7 0.608668
Target:  5'- uGGGGCCGCGUG-C-CGuGCAUGUugACa -3'
miRNA:   3'- -UUUCGGCGCGCaGaGC-CGUGCAugUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.