miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 102337 1.06 0.002805
Target:  5'- cAAAGCCGCGCGUCUCGGCACGUACACc -3'
miRNA:   3'- -UUUCGGCGCGCAGAGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 128745 0.81 0.135658
Target:  5'- cGAGCCGCGCcc--CGGCGCGUGCACg -3'
miRNA:   3'- uUUCGGCGCGcagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 65746 0.81 0.154536
Target:  5'- --cGCCGCGCGggcCUCGGCGuauuCGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGCa--GAGCCGU----GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 91189 0.77 0.261816
Target:  5'- --cGCCGCGCaacagC-CGGCGCGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGca---GaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 47688 0.76 0.309151
Target:  5'- --cGCCGCGCGUUUCucaacgcggGGCAaGUGCACg -3'
miRNA:   3'- uuuCGGCGCGCAGAG---------CCGUgCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37038 0.75 0.316422
Target:  5'- -uGGCCGUGCa---CGGCGCGUGCACg -3'
miRNA:   3'- uuUCGGCGCGcagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 89159 0.75 0.323822
Target:  5'- --cGCCGCGCgGUUUCGuGCACGcugGCGCa -3'
miRNA:   3'- uuuCGGCGCG-CAGAGC-CGUGCa--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 42760 0.75 0.3547
Target:  5'- uGAGCgGCGCGcUCgggUCGGC-CGUGCGCa -3'
miRNA:   3'- uUUCGgCGCGC-AG---AGCCGuGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 98782 0.75 0.3547
Target:  5'- uGGAGCCGCGCGgaacgcuaUCgcgCGGCGCG-GCGCc -3'
miRNA:   3'- -UUUCGGCGCGC--------AGa--GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 129542 0.74 0.396128
Target:  5'- cGAGCUGCGCG-CggccaCGGCGCGcGCGCa -3'
miRNA:   3'- uUUCGGCGCGCaGa----GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 112060 0.74 0.396128
Target:  5'- -cGGCCGCGuCGUCUUccaGCAgGUGCGCa -3'
miRNA:   3'- uuUCGGCGC-GCAGAGc--CGUgCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 373 0.73 0.422437
Target:  5'- -uGGCCGCGCGauugugCUCGGCcaGCGUugAa -3'
miRNA:   3'- uuUCGGCGCGCa-----GAGCCG--UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 45475 0.73 0.431437
Target:  5'- -cAGCCGCGCGUCUa-GCGCGgugccaaACACc -3'
miRNA:   3'- uuUCGGCGCGCAGAgcCGUGCa------UGUG- -5'
6755 5' -56.9 NC_001875.2 + 11101 0.73 0.449768
Target:  5'- -cGGCCGC-CGUCUCGGCGCc-GCAg -3'
miRNA:   3'- uuUCGGCGcGCAGAGCCGUGcaUGUg -5'
6755 5' -56.9 NC_001875.2 + 19010 0.72 0.459093
Target:  5'- cAGGCCGCaacGCG-CUUuGCACGUGCGCg -3'
miRNA:   3'- uUUCGGCG---CGCaGAGcCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 83594 0.72 0.467573
Target:  5'- --cGCCGCGCGcCuuauucacgguguUCGGCGCGUuccGCGCc -3'
miRNA:   3'- uuuCGGCGCGCaG-------------AGCCGUGCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 79883 0.72 0.46852
Target:  5'- --cGCgCGCGCGUg-CGGCACGUcGCGCc -3'
miRNA:   3'- uuuCG-GCGCGCAgaGCCGUGCA-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 37357 0.72 0.46852
Target:  5'- -cGGCCGCGCG-CUCGuGCgaACGcGCGCg -3'
miRNA:   3'- uuUCGGCGCGCaGAGC-CG--UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 58073 0.72 0.507171
Target:  5'- ---aCCGCGCuGUCggcggucUGGCGCGUGCGCa -3'
miRNA:   3'- uuucGGCGCG-CAGa------GCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 122534 0.72 0.507171
Target:  5'- --cGCCGauuGCGUC-CGGCGCGcagUGCACa -3'
miRNA:   3'- uuuCGGCg--CGCAGaGCCGUGC---AUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.