miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 273 0.66 0.825373
Target:  5'- --uGCCGCGCGUUgUCGuugaacucCACGUugACg -3'
miRNA:   3'- uuuCGGCGCGCAG-AGCc-------GUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 373 0.73 0.422437
Target:  5'- -uGGCCGCGCGauugugCUCGGCcaGCGUugAa -3'
miRNA:   3'- uuUCGGCGCGCa-----GAGCCG--UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 1161 0.7 0.608668
Target:  5'- uGGGGCCGCGUG-C-CGuGCAUGUugACa -3'
miRNA:   3'- -UUUCGGCGCGCaGaGC-CGUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 2307 0.68 0.720834
Target:  5'- -uGGCCGCGCGcagCUCGGCcagcucgGCcUGCAg -3'
miRNA:   3'- uuUCGGCGCGCa--GAGCCG-------UGcAUGUg -5'
6755 5' -56.9 NC_001875.2 + 5163 0.71 0.567464
Target:  5'- uGAGCCGCaaCGUgCUCGucaGCGCGUGCAUg -3'
miRNA:   3'- uUUCGGCGc-GCA-GAGC---CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 7041 0.67 0.789631
Target:  5'- -uGGCCGCGCGcuUgUCGGCcugguuccgcuGCGgcgACGCc -3'
miRNA:   3'- uuUCGGCGCGC--AgAGCCG-----------UGCa--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 9529 0.67 0.784055
Target:  5'- gGAAGCCGCGCccgauaggacgCGGCugGUGaGCg -3'
miRNA:   3'- -UUUCGGCGCGcaga-------GCCGugCAUgUG- -5'
6755 5' -56.9 NC_001875.2 + 9673 0.69 0.670845
Target:  5'- -cAGCUGCGCGgcgCUgucgaaaaaauUGuGCGCGUGCACc -3'
miRNA:   3'- uuUCGGCGCGCa--GA-----------GC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 11101 0.73 0.449768
Target:  5'- -cGGCCGC-CGUCUCGGCGCc-GCAg -3'
miRNA:   3'- uuUCGGCGcGCAGAGCCGUGcaUGUg -5'
6755 5' -56.9 NC_001875.2 + 12417 0.69 0.650156
Target:  5'- --uGCCGCGCGcCaagcaGGCcguuGCGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGCaGag---CCG----UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 16922 0.68 0.731837
Target:  5'- cGGGCCuCGUGUUugagcgcaUCGGCGCGUuGCGCc -3'
miRNA:   3'- uUUCGGcGCGCAG--------AGCCGUGCA-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 19010 0.72 0.459093
Target:  5'- cAGGCCGCaacGCG-CUUuGCACGUGCGCg -3'
miRNA:   3'- uUUCGGCG---CGCaGAGcCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 19864 0.68 0.691404
Target:  5'- -cGGCCGCGUcg--CGGCGCGgGCGCc -3'
miRNA:   3'- uuUCGGCGCGcagaGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 20038 0.66 0.842194
Target:  5'- -cAGCCagGCGCcg-UCGGcCGCGUGCACc -3'
miRNA:   3'- uuUCGG--CGCGcagAGCC-GUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 21261 0.67 0.761264
Target:  5'- cAGGCgCGCGCG-CggcgCGGCuACGaGCACg -3'
miRNA:   3'- uUUCG-GCGCGCaGa---GCCG-UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 21563 0.66 0.798808
Target:  5'- cGGGCCGCGCGauauuagcgUGGaCGCGUACGu -3'
miRNA:   3'- uUUCGGCGCGCaga------GCC-GUGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 21751 0.7 0.577712
Target:  5'- -uGGCCGCGCGUggCGGCcuccacgcgcaGCGUcucuGCGCg -3'
miRNA:   3'- uuUCGGCGCGCAgaGCCG-----------UGCA----UGUG- -5'
6755 5' -56.9 NC_001875.2 + 21861 0.67 0.769897
Target:  5'- --cGaCCGCGCGUacgUGGCAaacuuguacuuguCGUACACg -3'
miRNA:   3'- uuuC-GGCGCGCAga-GCCGU-------------GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 21904 0.68 0.71176
Target:  5'- --cGCUGCuccGCGgugagCGGCGCGUGCAUg -3'
miRNA:   3'- uuuCGGCG---CGCaga--GCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 22815 0.7 0.608668
Target:  5'- -uGGCCGUGCgGUCcgacggcaccgUCGGCggcacgACGUACGCg -3'
miRNA:   3'- uuUCGGCGCG-CAG-----------AGCCG------UGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.