miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 30719 0.7 0.597288
Target:  5'- cGAGCa--GCGUCaagguaacuggaaUUGGCACGUGCACg -3'
miRNA:   3'- uUUCGgcgCGCAG-------------AGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37357 0.72 0.46852
Target:  5'- -cGGCCGCGCG-CUCGuGCgaACGcGCGCg -3'
miRNA:   3'- uuUCGGCGCGCaGAGC-CG--UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 124981 0.71 0.531002
Target:  5'- --cGCCGCGCGUCcgcuuuacgugcaagUUGGCGuCGgGCACg -3'
miRNA:   3'- uuuCGGCGCGCAG---------------AGCCGU-GCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42045 0.71 0.547114
Target:  5'- --uGCCGCccGCGcugcgUUCGcGCACGUGCACg -3'
miRNA:   3'- uuuCGGCG--CGCa----GAGC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 125181 0.71 0.557262
Target:  5'- -cGGCCguugcccagauuGCGCGUgCUgGGCACGUuuaGCACg -3'
miRNA:   3'- uuUCGG------------CGCGCA-GAgCCGUGCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 33235 0.71 0.567464
Target:  5'- --cGCCggGCGcCGUUUCGGCGCG-GCGCu -3'
miRNA:   3'- uuuCGG--CGC-GCAGAGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 5163 0.71 0.567464
Target:  5'- uGAGCCGCaaCGUgCUCGucaGCGCGUGCAUg -3'
miRNA:   3'- uUUCGGCGc-GCA-GAGC---CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 43027 0.7 0.577712
Target:  5'- --uGCCGCGCGcCgCGGCGCGcGgGCu -3'
miRNA:   3'- uuuCGGCGCGCaGaGCCGUGCaUgUG- -5'
6755 5' -56.9 NC_001875.2 + 33942 0.7 0.58697
Target:  5'- -cAGCuugCGcCGCGUUUCGGCgucuacaACGUGCACg -3'
miRNA:   3'- uuUCG---GC-GCGCAGAGCCG-------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 83594 0.72 0.467573
Target:  5'- --cGCCGCGCGcCuuauucacgguguUCGGCGCGUuccGCGCc -3'
miRNA:   3'- uuuCGGCGCGCaG-------------AGCCGUGCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 19010 0.72 0.459093
Target:  5'- cAGGCCGCaacGCG-CUUuGCACGUGCGCg -3'
miRNA:   3'- uUUCGGCG---CGCaGAGcCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 11101 0.73 0.449768
Target:  5'- -cGGCCGC-CGUCUCGGCGCc-GCAg -3'
miRNA:   3'- uuUCGGCGcGCAGAGCCGUGcaUGUg -5'
6755 5' -56.9 NC_001875.2 + 65746 0.81 0.154536
Target:  5'- --cGCCGCGCGggcCUCGGCGuauuCGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGCa--GAGCCGU----GCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 91189 0.77 0.261816
Target:  5'- --cGCCGCGCaacagC-CGGCGCGUGCGCg -3'
miRNA:   3'- uuuCGGCGCGca---GaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 47688 0.76 0.309151
Target:  5'- --cGCCGCGCGUUUCucaacgcggGGCAaGUGCACg -3'
miRNA:   3'- uuuCGGCGCGCAGAG---------CCGUgCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37038 0.75 0.316422
Target:  5'- -uGGCCGUGCa---CGGCGCGUGCACg -3'
miRNA:   3'- uuUCGGCGCGcagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42760 0.75 0.3547
Target:  5'- uGAGCgGCGCGcUCgggUCGGC-CGUGCGCa -3'
miRNA:   3'- uUUCGgCGCGC-AG---AGCCGuGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 98782 0.75 0.3547
Target:  5'- uGGAGCCGCGCGgaacgcuaUCgcgCGGCGCG-GCGCc -3'
miRNA:   3'- -UUUCGGCGCGC--------AGa--GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 129542 0.74 0.396128
Target:  5'- cGAGCUGCGCG-CggccaCGGCGCGcGCGCa -3'
miRNA:   3'- uUUCGGCGCGCaGa----GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 45475 0.73 0.431437
Target:  5'- -cAGCCGCGCGUCUa-GCGCGgugccaaACACc -3'
miRNA:   3'- uuUCGGCGCGCAGAgcCGUGCa------UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.