miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 102337 1.06 0.002805
Target:  5'- cAAAGCCGCGCGUCUCGGCACGUACACc -3'
miRNA:   3'- -UUUCGGCGCGCAGAGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 50487 0.7 0.619033
Target:  5'- -cGGCCgGCGCGUgCgcgCGGCACcaGCGCg -3'
miRNA:   3'- uuUCGG-CGCGCA-Ga--GCCGUGcaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 119392 0.69 0.639785
Target:  5'- --uGCCGCugaaugGCGUCcaccgCGGCGCGcACGCa -3'
miRNA:   3'- uuuCGGCG------CGCAGa----GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 90993 0.66 0.842194
Target:  5'- --cGgUGCGCGUCUUGGCGa--GCGCc -3'
miRNA:   3'- uuuCgGCGCGCAGAGCCGUgcaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 79883 0.72 0.46852
Target:  5'- --cGCgCGCGCGUg-CGGCACGUcGCGCc -3'
miRNA:   3'- uuuCG-GCGCGCAgaGCCGUGCA-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 122534 0.72 0.507171
Target:  5'- --cGCCGauuGCGUC-CGGCGCGcagUGCACa -3'
miRNA:   3'- uuuCGGCg--CGCAGaGCCGUGC---AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 75601 0.72 0.507171
Target:  5'- -cAGCCGCGCG-C-CGGCGUGUACGa -3'
miRNA:   3'- uuUCGGCGCGCaGaGCCGUGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 102252 0.71 0.517048
Target:  5'- aGAAGCCGCGgGUgagcgCUCGcGCGCGuUGCAg -3'
miRNA:   3'- -UUUCGGCGCgCA-----GAGC-CGUGC-AUGUg -5'
6755 5' -56.9 NC_001875.2 + 43110 0.71 0.557262
Target:  5'- cGGGCCGUGCucGUuaaaCUCGGCGCGcaUGCGCc -3'
miRNA:   3'- uUUCGGCGCG--CA----GAGCCGUGC--AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 84221 0.7 0.615922
Target:  5'- uAGGGCCGCGCGcgCUCGuccaggaaaaugucGC-UGUACACa -3'
miRNA:   3'- -UUUCGGCGCGCa-GAGC--------------CGuGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 65782 0.7 0.597288
Target:  5'- cGAGCaCGCGCGcggCgUCGGCGCGcggugccUGCGCg -3'
miRNA:   3'- uUUCG-GCGCGCa--G-AGCCGUGC-------AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 86950 0.71 0.547114
Target:  5'- cGAGCCGCcaGCGUCcaagCGGCGCaaaGCGCa -3'
miRNA:   3'- uUUCGGCG--CGCAGa---GCCGUGca-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 89159 0.75 0.323822
Target:  5'- --cGCCGCGCgGUUUCGuGCACGcugGCGCa -3'
miRNA:   3'- uuuCGGCGCG-CAGAGC-CGUGCa--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 119902 0.7 0.598321
Target:  5'- -cGGUCGCGCGcacagUCGGCGCGccGCGCg -3'
miRNA:   3'- uuUCGGCGCGCag---AGCCGUGCa-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 112060 0.74 0.396128
Target:  5'- -cGGCCGCGuCGUCUUccaGCAgGUGCGCa -3'
miRNA:   3'- uuUCGGCGC-GCAGAGc--CGUgCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 89773 0.71 0.527001
Target:  5'- -uGGUCGgcgaCGCG-CUCGuGCACGUGCGCg -3'
miRNA:   3'- uuUCGGC----GCGCaGAGC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 1161 0.7 0.608668
Target:  5'- uGGGGCCGCGUG-C-CGuGCAUGUugACa -3'
miRNA:   3'- -UUUCGGCGCGCaGaGC-CGUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 113357 0.69 0.639785
Target:  5'- --cGCgGCuGCGUCgcugCGGCGCG-GCGCa -3'
miRNA:   3'- uuuCGgCG-CGCAGa---GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 373 0.73 0.422437
Target:  5'- -uGGCCGCGCGauugugCUCGGCcaGCGUugAa -3'
miRNA:   3'- uuUCGGCGCGCa-----GAGCCG--UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 58073 0.72 0.507171
Target:  5'- ---aCCGCGCuGUCggcggucUGGCGCGUGCGCa -3'
miRNA:   3'- uuucGGCGCG-CAGa------GCCGUGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.