miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 23799 0.67 0.789631
Target:  5'- --cGCCGaCGUGUCgcuccgCGGCGuCGgGCGCg -3'
miRNA:   3'- uuuCGGC-GCGCAGa-----GCCGU-GCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 26970 0.67 0.780309
Target:  5'- cAAGGCCGUucucgauuuGCG-CUCGGCcACGUugAg -3'
miRNA:   3'- -UUUCGGCG---------CGCaGAGCCG-UGCAugUg -5'
6755 5' -56.9 NC_001875.2 + 30719 0.7 0.597288
Target:  5'- cGAGCa--GCGUCaagguaacuggaaUUGGCACGUGCACg -3'
miRNA:   3'- uUUCGgcgCGCAG-------------AGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 31248 0.69 0.681145
Target:  5'- -cGGCCG-GCGcC-CGGCccGCGUACGCg -3'
miRNA:   3'- uuUCGGCgCGCaGaGCCG--UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 31523 0.67 0.761264
Target:  5'- gAAGGCgGCGgGUCguugaaCGGCACcacuUGCACg -3'
miRNA:   3'- -UUUCGgCGCgCAGa-----GCCGUGc---AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 32090 0.68 0.691404
Target:  5'- cAGGCuUGCGCGUCaCaGCACGaGCACg -3'
miRNA:   3'- uUUCG-GCGCGCAGaGcCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 32801 0.66 0.816688
Target:  5'- --cGCCGCGcCGgcaagCUCGGCGaacgGCGCc -3'
miRNA:   3'- uuuCGGCGC-GCa----GAGCCGUgca-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 33235 0.71 0.567464
Target:  5'- --cGCCggGCGcCGUUUCGGCGCG-GCGCu -3'
miRNA:   3'- uuuCGG--CGC-GCAGAGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 33942 0.7 0.58697
Target:  5'- -cAGCuugCGcCGCGUUUCGGCgucuacaACGUGCACg -3'
miRNA:   3'- uuUCG---GC-GCGCAGAGCCG-------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 35739 0.67 0.761264
Target:  5'- -cGGCCGCGuCGgucagCUCGcGCuucauuuuagucACGUGCACc -3'
miRNA:   3'- uuUCGGCGC-GCa----GAGC-CG------------UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 35891 0.66 0.807829
Target:  5'- uGAGCCgGCGCGUUgccagcuccagCGGguUGUACAg -3'
miRNA:   3'- uUUCGG-CGCGCAGa----------GCCguGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 36428 0.67 0.780309
Target:  5'- --cGCCGCgGUGUCg-GGCugGUGCu- -3'
miRNA:   3'- uuuCGGCG-CGCAGagCCGugCAUGug -5'
6755 5' -56.9 NC_001875.2 + 37038 0.75 0.316422
Target:  5'- -uGGCCGUGCa---CGGCGCGUGCACg -3'
miRNA:   3'- uuUCGGCGCGcagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37123 0.67 0.780309
Target:  5'- --cGCCGCgccggcguuuGCGUCUUucCGCGUGCGCa -3'
miRNA:   3'- uuuCGGCG----------CGCAGAGccGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37357 0.72 0.46852
Target:  5'- -cGGCCGCGCG-CUCGuGCgaACGcGCGCg -3'
miRNA:   3'- uuUCGGCGCGCaGAGC-CG--UGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37883 0.66 0.816688
Target:  5'- cGGGCCGCGCcagcggCUugcUGGCGCG-GCACu -3'
miRNA:   3'- uUUCGGCGCGca----GA---GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 39580 0.69 0.660512
Target:  5'- -cGGCCGCGCugcUCagcaCGGUccGCGUGCACg -3'
miRNA:   3'- uuUCGGCGCGc--AGa---GCCG--UGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42045 0.71 0.547114
Target:  5'- --uGCCGCccGCGcugcgUUCGcGCACGUGCACg -3'
miRNA:   3'- uuuCGGCG--CGCa----GAGC-CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42295 0.66 0.828797
Target:  5'- cAGGCUGCGCGUgcguaUagacgaucccgccuaUCGGCGCG-ACGCc -3'
miRNA:   3'- uUUCGGCGCGCA-----G---------------AGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42586 0.68 0.691404
Target:  5'- --cGCaCGCGCGcgucagCUCGGCGCuggGCACc -3'
miRNA:   3'- uuuCG-GCGCGCa-----GAGCCGUGca-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.