miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 131767 0.66 0.833878
Target:  5'- cGGGCgGCGCGUCaUUGGUGuCGUuCGCc -3'
miRNA:   3'- uUUCGgCGCGCAG-AGCCGU-GCAuGUG- -5'
6755 5' -56.9 NC_001875.2 + 129542 0.74 0.396128
Target:  5'- cGAGCUGCGCG-CggccaCGGCGCGcGCGCa -3'
miRNA:   3'- uUUCGGCGCGCaGa----GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 128745 0.81 0.135658
Target:  5'- cGAGCCGCGCcc--CGGCGCGUGCACg -3'
miRNA:   3'- uUUCGGCGCGcagaGCCGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 128480 0.7 0.598321
Target:  5'- -cAGCCGCGCGuuaUCUCauGCGCGUgaccggACACg -3'
miRNA:   3'- uuUCGGCGCGC---AGAGc-CGUGCA------UGUG- -5'
6755 5' -56.9 NC_001875.2 + 127549 0.68 0.721838
Target:  5'- cAAGaCCGCGUGcuugaUCGGCGCGcugcUGCACu -3'
miRNA:   3'- uUUC-GGCGCGCag---AGCCGUGC----AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 125339 0.66 0.807829
Target:  5'- -cGGCgGCcaGCGUgUUGGCGCG-GCACu -3'
miRNA:   3'- uuUCGgCG--CGCAgAGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 125181 0.71 0.557262
Target:  5'- -cGGCCguugcccagauuGCGCGUgCUgGGCACGUuuaGCACg -3'
miRNA:   3'- uuUCGG------------CGCGCA-GAgCCGUGCA---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 124981 0.71 0.531002
Target:  5'- --cGCCGCGCGUCcgcuuuacgugcaagUUGGCGuCGgGCACg -3'
miRNA:   3'- uuuCGGCGCGCAG---------------AGCCGU-GCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 124692 0.66 0.825373
Target:  5'- uGGGUCGCGC----UGGCACGUGCGg -3'
miRNA:   3'- uUUCGGCGCGcagaGCCGUGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 122534 0.72 0.507171
Target:  5'- --cGCCGauuGCGUC-CGGCGCGcagUGCACa -3'
miRNA:   3'- uuuCGGCg--CGCAGaGCCGUGC---AUGUG- -5'
6755 5' -56.9 NC_001875.2 + 119902 0.7 0.598321
Target:  5'- -cGGUCGCGCGcacagUCGGCGCGccGCGCg -3'
miRNA:   3'- uuUCGGCGCGCag---AGCCGUGCa-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 119392 0.69 0.639785
Target:  5'- --uGCCGCugaaugGCGUCcaccgCGGCGCGcACGCa -3'
miRNA:   3'- uuuCGGCG------CGCAGa----GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 116910 0.68 0.721838
Target:  5'- -uAGCCGCGCG---CGGCGgGUgGCGCa -3'
miRNA:   3'- uuUCGGCGCGCagaGCCGUgCA-UGUG- -5'
6755 5' -56.9 NC_001875.2 + 116176 0.66 0.842194
Target:  5'- --cGCCGUGUGUCgaaugugUGGCguGCGUcuGCACc -3'
miRNA:   3'- uuuCGGCGCGCAGa------GCCG--UGCA--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 115946 0.66 0.798808
Target:  5'- cAAAGUagCGCGgGUCuUCGGCAa-UGCACg -3'
miRNA:   3'- -UUUCG--GCGCgCAG-AGCCGUgcAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 114961 0.67 0.752535
Target:  5'- --cGCUGCGCGUacgcauacaaccaGGgGCGUACACg -3'
miRNA:   3'- uuuCGGCGCGCAgag----------CCgUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 114670 0.66 0.825373
Target:  5'- -uGGCgGUGCGUCagCGGCGacCGUGCu- -3'
miRNA:   3'- uuUCGgCGCGCAGa-GCCGU--GCAUGug -5'
6755 5' -56.9 NC_001875.2 + 114085 0.69 0.660512
Target:  5'- --cGCCGcCGUGUCcacaagCGGCAUGgcgACGCa -3'
miRNA:   3'- uuuCGGC-GCGCAGa-----GCCGUGCa--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 114031 0.66 0.802436
Target:  5'- -cGGCCGCGCgGUCcagaugguagcacgCGggcuGCGCGUACGCc -3'
miRNA:   3'- uuUCGGCGCG-CAGa-------------GC----CGUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 113357 0.69 0.639785
Target:  5'- --cGCgGCuGCGUCgcugCGGCGCG-GCGCa -3'
miRNA:   3'- uuuCGgCG-CGCAGa---GCCGUGCaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.