miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 37041 0.68 0.996195
Target:  5'- --uGAAGCUGACGUgCGUGC-UGUG-Cu -3'
miRNA:   3'- uuuUUUUGACUGCA-GCACGuGCACcG- -5'
6756 3' -47.4 NC_001875.2 + 37901 0.66 0.999568
Target:  5'- -----uGCUGGCG-CG-GCAC-UGGCa -3'
miRNA:   3'- uuuuuuUGACUGCaGCaCGUGcACCG- -5'
6756 3' -47.4 NC_001875.2 + 40258 0.68 0.997303
Target:  5'- aAGAAAcGCUGAaaacgGUCGcguuuccGUACGUGGCg -3'
miRNA:   3'- -UUUUUuUGACUg----CAGCa------CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 40427 0.66 0.999457
Target:  5'- cGAGGGGCUGACG-CGcGCcaucgagaACGUGGg -3'
miRNA:   3'- uUUUUUUGACUGCaGCaCG--------UGCACCg -5'
6756 3' -47.4 NC_001875.2 + 41057 0.68 0.994737
Target:  5'- ---cGAGCggcGugGUCGUGCACGccguaaGGUa -3'
miRNA:   3'- uuuuUUUGa--CugCAGCACGUGCa-----CCG- -5'
6756 3' -47.4 NC_001875.2 + 41600 0.66 0.99916
Target:  5'- -cGAAGGCgcgGGCG-CGgGCGCG-GGCa -3'
miRNA:   3'- uuUUUUUGa--CUGCaGCaCGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 43736 0.67 0.998454
Target:  5'- -uGGAAACgGGCGUUG-GCugGcuUGGCu -3'
miRNA:   3'- uuUUUUUGaCUGCAGCaCGugC--ACCG- -5'
6756 3' -47.4 NC_001875.2 + 43860 0.67 0.998731
Target:  5'- -----cGCgGGCGUCGcGUACGcgGGCg -3'
miRNA:   3'- uuuuuuUGaCUGCAGCaCGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 44188 0.67 0.997747
Target:  5'- -----cGCUGAcCGUCG-GCGCGUGa- -3'
miRNA:   3'- uuuuuuUGACU-GCAGCaCGUGCACcg -5'
6756 3' -47.4 NC_001875.2 + 50157 0.66 0.99916
Target:  5'- -----uGCUGAgGUCGUagauccGCACGUGcGUc -3'
miRNA:   3'- uuuuuuUGACUgCAGCA------CGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 50487 0.7 0.983887
Target:  5'- ----cGGCcGGCG-CGUGCGCGcGGCa -3'
miRNA:   3'- uuuuuUUGaCUGCaGCACGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 54303 0.71 0.974308
Target:  5'- cGAAGuAGCUGGgcUCGUGCACGgccguggGGCa -3'
miRNA:   3'- -UUUUuUUGACUgcAGCACGUGCa------CCG- -5'
6756 3' -47.4 NC_001875.2 + 54318 0.77 0.81349
Target:  5'- --cAAAAUUGGCgGUCGUGCGCGUGa- -3'
miRNA:   3'- uuuUUUUGACUG-CAGCACGUGCACcg -5'
6756 3' -47.4 NC_001875.2 + 57541 0.66 0.999568
Target:  5'- --uAGAGCa-GCGguugCG-GCACGUGGCg -3'
miRNA:   3'- uuuUUUUGacUGCa---GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 60538 0.69 0.991735
Target:  5'- ----cAACU--UGUCGgccagGCACGUGGCg -3'
miRNA:   3'- uuuuuUUGAcuGCAGCa----CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 61111 0.8 0.635309
Target:  5'- aAGAGGGGCUGGCGUUGa-CGCGUGGCc -3'
miRNA:   3'- -UUUUUUUGACUGCAGCacGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 62524 0.7 0.989074
Target:  5'- ------uUUGACGUCGacuuggacgcuUGCGCGuUGGCa -3'
miRNA:   3'- uuuuuuuGACUGCAGC-----------ACGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 62561 0.66 0.999568
Target:  5'- ---cGAACgUGuCGUCgGUGUGCGUGuGCa -3'
miRNA:   3'- uuuuUUUG-ACuGCAG-CACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 63331 0.67 0.998731
Target:  5'- -cAAAAACuuccaccgUGuCGUCGUGCAcgguuuCGUGGUa -3'
miRNA:   3'- uuUUUUUG--------ACuGCAGCACGU------GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 65760 0.68 0.997303
Target:  5'- --------cGGCGuauUCGUGCGCGgcgGGCg -3'
miRNA:   3'- uuuuuuugaCUGC---AGCACGUGCa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.