miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 277 0.73 0.928131
Target:  5'- -----uGCUGGCGUCGccGCAUGcUGGCc -3'
miRNA:   3'- uuuuuuUGACUGCAGCa-CGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 440 0.69 0.993855
Target:  5'- ---cGAGCgUGcCGUCGUGCACc-GGCg -3'
miRNA:   3'- uuuuUUUG-ACuGCAGCACGUGcaCCG- -5'
6756 3' -47.4 NC_001875.2 + 737 0.66 0.99938
Target:  5'- --cAAAGCUGGgGuggucagacauuaaaUCGUGCACGUugauuucgucGGCg -3'
miRNA:   3'- uuuUUUUGACUgC---------------AGCACGUGCA----------CCG- -5'
6756 3' -47.4 NC_001875.2 + 774 0.66 0.999568
Target:  5'- ----cAGCUGACGgCG-GCGCGcggaacguucaUGGCg -3'
miRNA:   3'- uuuuuUUGACUGCaGCaCGUGC-----------ACCG- -5'
6756 3' -47.4 NC_001875.2 + 2281 0.68 0.995514
Target:  5'- ------gUUGACGUCGUgaugcgcgcGCGcCGUGGCc -3'
miRNA:   3'- uuuuuuuGACUGCAGCA---------CGU-GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 9690 0.73 0.938923
Target:  5'- cGAAAAAAUUGuGCG-CGUGCAcccauCGUGGCc -3'
miRNA:   3'- -UUUUUUUGAC-UGCaGCACGU-----GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 9696 0.71 0.974308
Target:  5'- --uGGGGCUcGcCGUCGUGCGCGccGGCc -3'
miRNA:   3'- uuuUUUUGA-CuGCAGCACGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 9746 0.67 0.998454
Target:  5'- ----cGACUGuCGUUGUaCGCGaUGGCg -3'
miRNA:   3'- uuuuuUUGACuGCAGCAcGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 12611 0.66 0.999457
Target:  5'- ----cAACUGAUGUUG-GCGCcaggGGCg -3'
miRNA:   3'- uuuuuUUGACUGCAGCaCGUGca--CCG- -5'
6756 3' -47.4 NC_001875.2 + 17769 0.67 0.998731
Target:  5'- -----cGCaGACGUCGgaaacuaGCGUGGCg -3'
miRNA:   3'- uuuuuuUGaCUGCAGCacg----UGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 18037 0.69 0.991735
Target:  5'- -----cAUUGACGUgcaaugCGacaUGCGCGUGGCg -3'
miRNA:   3'- uuuuuuUGACUGCA------GC---ACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 19857 0.67 0.998964
Target:  5'- --cAAGACUcggccGCGUCGcgGCGCG-GGCg -3'
miRNA:   3'- uuuUUUUGAc----UGCAGCa-CGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 22314 0.68 0.994737
Target:  5'- ---uAAACUGua-UCGUGUACGUGGg -3'
miRNA:   3'- uuuuUUUGACugcAGCACGUGCACCg -5'
6756 3' -47.4 NC_001875.2 + 24409 0.75 0.889863
Target:  5'- --cAAAGCUGGCGUCGggggcguaacugaacGCGCG-GGCg -3'
miRNA:   3'- uuuUUUUGACUGCAGCa--------------CGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 29299 0.66 0.999659
Target:  5'- ----cGugUGGCGugUCGUGCGCGUuguuGCg -3'
miRNA:   3'- uuuuuUugACUGC--AGCACGUGCAc---CG- -5'
6756 3' -47.4 NC_001875.2 + 33306 0.66 0.999659
Target:  5'- -----cACUG-CGgguuggCGaGCGCGUGGCg -3'
miRNA:   3'- uuuuuuUGACuGCa-----GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 36331 0.67 0.998129
Target:  5'- --uGGGGCUGuuGCG-CGUGUACGcGGCc -3'
miRNA:   3'- uuuUUUUGAC--UGCaGCACGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 36488 0.71 0.971373
Target:  5'- -----cGCcGACG-CGUGCACGUGcGCc -3'
miRNA:   3'- uuuuuuUGaCUGCaGCACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 36649 0.7 0.985789
Target:  5'- -uGAAGAUggccGCGUCGUGCGCGcUGaGCu -3'
miRNA:   3'- uuUUUUUGac--UGCAGCACGUGC-AC-CG- -5'
6756 3' -47.4 NC_001875.2 + 36869 0.82 0.537056
Target:  5'- cAAAAGAACgu-CGUCGUGCGCGcGGCa -3'
miRNA:   3'- -UUUUUUUGacuGCAGCACGUGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.