miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 44188 0.67 0.997747
Target:  5'- -----cGCUGAcCGUCG-GCGCGUGa- -3'
miRNA:   3'- uuuuuuUGACU-GCAGCaCGUGCACcg -5'
6756 3' -47.4 NC_001875.2 + 18037 0.69 0.991735
Target:  5'- -----cAUUGACGUgcaaugCGacaUGCGCGUGGCg -3'
miRNA:   3'- uuuuuuUGACUGCA------GC---ACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 100060 0.69 0.992858
Target:  5'- --uGGAGCUGACGgUGcUGCugG-GGCa -3'
miRNA:   3'- uuuUUUUGACUGCaGC-ACGugCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 440 0.69 0.993855
Target:  5'- ---cGAGCgUGcCGUCGUGCACc-GGCg -3'
miRNA:   3'- uuuuUUUG-ACuGCAGCACGUGcaCCG- -5'
6756 3' -47.4 NC_001875.2 + 121979 0.68 0.995514
Target:  5'- cAAAAAGCUGGCGg---GCACGUuGCc -3'
miRNA:   3'- uUUUUUUGACUGCagcaCGUGCAcCG- -5'
6756 3' -47.4 NC_001875.2 + 96967 0.68 0.996788
Target:  5'- cAAGAcGACgcugugGACGUCGUGCGCaaGUuGCg -3'
miRNA:   3'- -UUUUuUUGa-----CUGCAGCACGUG--CAcCG- -5'
6756 3' -47.4 NC_001875.2 + 125006 0.68 0.996788
Target:  5'- ------gUUGGCGUCGgGCACGUugucgacgcGGCg -3'
miRNA:   3'- uuuuuuuGACUGCAGCaCGUGCA---------CCG- -5'
6756 3' -47.4 NC_001875.2 + 40258 0.68 0.997303
Target:  5'- aAGAAAcGCUGAaaacgGUCGcguuuccGUACGUGGCg -3'
miRNA:   3'- -UUUUUuUGACUg----CAGCa------CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 65760 0.68 0.997303
Target:  5'- --------cGGCGuauUCGUGCGCGgcgGGCg -3'
miRNA:   3'- uuuuuuugaCUGC---AGCACGUGCa--CCG- -5'
6756 3' -47.4 NC_001875.2 + 60538 0.69 0.991735
Target:  5'- ----cAACU--UGUCGgccagGCACGUGGCg -3'
miRNA:   3'- uuuuuUUGAcuGCAGCa----CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 62524 0.7 0.989074
Target:  5'- ------uUUGACGUCGacuuggacgcuUGCGCGuUGGCa -3'
miRNA:   3'- uuuuuuuGACUGCAGC-----------ACGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 36649 0.7 0.985789
Target:  5'- -uGAAGAUggccGCGUCGUGCGCGcUGaGCu -3'
miRNA:   3'- uuUUUUUGac--UGCAGCACGUGC-AC-CG- -5'
6756 3' -47.4 NC_001875.2 + 92511 0.74 0.922318
Target:  5'- --cAAAACgGGCGcUCGUGCGCGcccGGCg -3'
miRNA:   3'- uuuUUUUGaCUGC-AGCACGUGCa--CCG- -5'
6756 3' -47.4 NC_001875.2 + 277 0.73 0.928131
Target:  5'- -----uGCUGGCGUCGccGCAUGcUGGCc -3'
miRNA:   3'- uuuuuuUGACUGCAGCa-CGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 90650 0.73 0.928131
Target:  5'- ---cAAGCUGGucccCGUCgGUGgGCGUGGCg -3'
miRNA:   3'- uuuuUUUGACU----GCAG-CACgUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 9690 0.73 0.938923
Target:  5'- cGAAAAAAUUGuGCG-CGUGCAcccauCGUGGCc -3'
miRNA:   3'- -UUUUUUUGAC-UGCaGCACGU-----GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 74359 0.71 0.968205
Target:  5'- ---cAAACUaGACGgCGUGCGCGgccgcGGCg -3'
miRNA:   3'- uuuuUUUGA-CUGCaGCACGUGCa----CCG- -5'
6756 3' -47.4 NC_001875.2 + 103456 0.71 0.971373
Target:  5'- --------cGGCGUCGUGCACGccGCg -3'
miRNA:   3'- uuuuuuugaCUGCAGCACGUGCacCG- -5'
6756 3' -47.4 NC_001875.2 + 54303 0.71 0.974308
Target:  5'- cGAAGuAGCUGGgcUCGUGCACGgccguggGGCa -3'
miRNA:   3'- -UUUUuUUGACUgcAGCACGUGCa------CCG- -5'
6756 3' -47.4 NC_001875.2 + 75584 0.7 0.981797
Target:  5'- -----cGCUGGCGUCG-GCgucgGCGaUGGCg -3'
miRNA:   3'- uuuuuuUGACUGCAGCaCG----UGC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.