Results 1 - 20 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 101317 | 1.12 | 0.011173 |
Target: 5'- cAAAAAAACUGACGUCGUGCACGUGGCg -3' miRNA: 3'- -UUUUUUUGACUGCAGCACGUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 37041 | 0.68 | 0.996195 |
Target: 5'- --uGAAGCUGACGUgCGUGC-UGUG-Cu -3' miRNA: 3'- uuuUUUUGACUGCA-GCACGuGCACcG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 124718 | 0.68 | 0.996788 |
Target: 5'- ------cCUGGCaagCG-GCGCGUGGCg -3' miRNA: 3'- uuuuuuuGACUGca-GCaCGUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 126544 | 0.66 | 0.999568 |
Target: 5'- ---uGGAgUGGuCGUCGgGCGCG-GGCa -3' miRNA: 3'- uuuuUUUgACU-GCAGCaCGUGCaCCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 24409 | 0.75 | 0.889863 |
Target: 5'- --cAAAGCUGGCGUCGggggcguaacugaacGCGCG-GGCg -3' miRNA: 3'- uuuUUUUGACUGCAGCa--------------CGUGCaCCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 89260 | 0.73 | 0.928131 |
Target: 5'- ---cGAGCUGACGcgcgCGUGCGCcgaccUGGCg -3' miRNA: 3'- uuuuUUUGACUGCa---GCACGUGc----ACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 36488 | 0.71 | 0.971373 |
Target: 5'- -----cGCcGACG-CGUGCACGUGcGCc -3' miRNA: 3'- uuuuuuUGaCUGCaGCACGUGCAC-CG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 9696 | 0.71 | 0.974308 |
Target: 5'- --uGGGGCUcGcCGUCGUGCGCGccGGCc -3' miRNA: 3'- uuuUUUUGA-CuGCAGCACGUGCa-CCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 89871 | 0.7 | 0.981577 |
Target: 5'- aGAAcgGGCUGGaGUuuaucaaguuggaCGUGUACGUGGCg -3' miRNA: 3'- -UUUuuUUGACUgCA-------------GCACGUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 2281 | 0.68 | 0.995514 |
Target: 5'- ------gUUGACGUCGUgaugcgcgcGCGcCGUGGCc -3' miRNA: 3'- uuuuuuuGACUGCAGCA---------CGU-GCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 123628 | 0.7 | 0.983887 |
Target: 5'- gAAGucGACUG-CGcCGUGaACGUGGCa -3' miRNA: 3'- -UUUuuUUGACuGCaGCACgUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 115804 | 0.71 | 0.974308 |
Target: 5'- ----cAGCUG-CGUCGaaacgUGUugGUGGCg -3' miRNA: 3'- uuuuuUUGACuGCAGC-----ACGugCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 61111 | 0.8 | 0.635309 |
Target: 5'- aAGAGGGGCUGGCGUUGa-CGCGUGGCc -3' miRNA: 3'- -UUUUUUUGACUGCAGCacGUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 22314 | 0.68 | 0.994737 |
Target: 5'- ---uAAACUGua-UCGUGUACGUGGg -3' miRNA: 3'- uuuuUUUGACugcAGCACGUGCACCg -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 54318 | 0.77 | 0.81349 |
Target: 5'- --cAAAAUUGGCgGUCGUGCGCGUGa- -3' miRNA: 3'- uuuUUUUGACUG-CAGCACGUGCACcg -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 89777 | 0.71 | 0.974308 |
Target: 5'- ----cGGC-GACGcgcUCGUGCACGUGcGCg -3' miRNA: 3'- uuuuuUUGaCUGC---AGCACGUGCAC-CG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 41057 | 0.68 | 0.994737 |
Target: 5'- ---cGAGCggcGugGUCGUGCACGccguaaGGUa -3' miRNA: 3'- uuuuUUUGa--CugCAGCACGUGCa-----CCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 104741 | 0.68 | 0.996788 |
Target: 5'- ---uGAACggGACGggCGUGgGCGUcGGCg -3' miRNA: 3'- uuuuUUUGa-CUGCa-GCACgUGCA-CCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 101163 | 0.76 | 0.822783 |
Target: 5'- --------cGugGcCGUGCGCGUGGCg -3' miRNA: 3'- uuuuuuugaCugCaGCACGUGCACCG- -5' |
|||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 89355 | 0.73 | 0.933665 |
Target: 5'- ---cGGAC-GACGgCGUGCGCGUGcGCg -3' miRNA: 3'- uuuuUUUGaCUGCaGCACGUGCAC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home