miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 101317 1.12 0.011173
Target:  5'- cAAAAAAACUGACGUCGUGCACGUGGCg -3'
miRNA:   3'- -UUUUUUUGACUGCAGCACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 36869 0.82 0.537056
Target:  5'- cAAAAGAACgu-CGUCGUGCGCGcGGCa -3'
miRNA:   3'- -UUUUUUUGacuGCAGCACGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 61111 0.8 0.635309
Target:  5'- aAGAGGGGCUGGCGUUGa-CGCGUGGCc -3'
miRNA:   3'- -UUUUUUUGACUGCAGCacGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 54318 0.77 0.81349
Target:  5'- --cAAAAUUGGCgGUCGUGCGCGUGa- -3'
miRNA:   3'- uuuUUUUGACUG-CAGCACGUGCACcg -5'
6756 3' -47.4 NC_001875.2 + 101163 0.76 0.822783
Target:  5'- --------cGugGcCGUGCGCGUGGCg -3'
miRNA:   3'- uuuuuuugaCugCaGCACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 24409 0.75 0.889863
Target:  5'- --cAAAGCUGGCGUCGggggcguaacugaacGCGCG-GGCg -3'
miRNA:   3'- uuuUUUUGACUGCAGCa--------------CGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 92511 0.74 0.922318
Target:  5'- --cAAAACgGGCGcUCGUGCGCGcccGGCg -3'
miRNA:   3'- uuuUUUUGaCUGC-AGCACGUGCa--CCG- -5'
6756 3' -47.4 NC_001875.2 + 89260 0.73 0.928131
Target:  5'- ---cGAGCUGACGcgcgCGUGCGCcgaccUGGCg -3'
miRNA:   3'- uuuuUUUGACUGCa---GCACGUGc----ACCG- -5'
6756 3' -47.4 NC_001875.2 + 277 0.73 0.928131
Target:  5'- -----uGCUGGCGUCGccGCAUGcUGGCc -3'
miRNA:   3'- uuuuuuUGACUGCAGCa-CGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 90650 0.73 0.928131
Target:  5'- ---cAAGCUGGucccCGUCgGUGgGCGUGGCg -3'
miRNA:   3'- uuuuUUUGACU----GCAG-CACgUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 89355 0.73 0.933665
Target:  5'- ---cGGAC-GACGgCGUGCGCGUGcGCg -3'
miRNA:   3'- uuuuUUUGaCUGCaGCACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 9690 0.73 0.938923
Target:  5'- cGAAAAAAUUGuGCG-CGUGCAcccauCGUGGCc -3'
miRNA:   3'- -UUUUUUUGAC-UGCaGCACGU-----GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 74359 0.71 0.968205
Target:  5'- ---cAAACUaGACGgCGUGCGCGgccgcGGCg -3'
miRNA:   3'- uuuuUUUGA-CUGCaGCACGUGCa----CCG- -5'
6756 3' -47.4 NC_001875.2 + 103456 0.71 0.971373
Target:  5'- --------cGGCGUCGUGCACGccGCg -3'
miRNA:   3'- uuuuuuugaCUGCAGCACGUGCacCG- -5'
6756 3' -47.4 NC_001875.2 + 36488 0.71 0.971373
Target:  5'- -----cGCcGACG-CGUGCACGUGcGCc -3'
miRNA:   3'- uuuuuuUGaCUGCaGCACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 89777 0.71 0.974308
Target:  5'- ----cGGC-GACGcgcUCGUGCACGUGcGCg -3'
miRNA:   3'- uuuuuUUGaCUGC---AGCACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 9696 0.71 0.974308
Target:  5'- --uGGGGCUcGcCGUCGUGCGCGccGGCc -3'
miRNA:   3'- uuuUUUUGA-CuGCAGCACGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 54303 0.71 0.974308
Target:  5'- cGAAGuAGCUGGgcUCGUGCACGgccguggGGCa -3'
miRNA:   3'- -UUUUuUUGACUgcAGCACGUGCa------CCG- -5'
6756 3' -47.4 NC_001875.2 + 115804 0.71 0.974308
Target:  5'- ----cAGCUG-CGUCGaaacgUGUugGUGGCg -3'
miRNA:   3'- uuuuuUUGACuGCAGC-----ACGugCACCG- -5'
6756 3' -47.4 NC_001875.2 + 89871 0.7 0.981577
Target:  5'- aGAAcgGGCUGGaGUuuaucaaguuggaCGUGUACGUGGCg -3'
miRNA:   3'- -UUUuuUUGACUgCA-------------GCACGUGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.