miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 131539 0.67 0.998454
Target:  5'- --cGGAGCgcgGACGagGUGCugGaccUGGCc -3'
miRNA:   3'- uuuUUUUGa--CUGCagCACGugC---ACCG- -5'
6756 3' -47.4 NC_001875.2 + 126544 0.66 0.999568
Target:  5'- ---uGGAgUGGuCGUCGgGCGCG-GGCa -3'
miRNA:   3'- uuuuUUUgACU-GCAGCaCGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 125006 0.68 0.996788
Target:  5'- ------gUUGGCGUCGgGCACGUugucgacgcGGCg -3'
miRNA:   3'- uuuuuuuGACUGCAGCaCGUGCA---------CCG- -5'
6756 3' -47.4 NC_001875.2 + 124718 0.68 0.996788
Target:  5'- ------cCUGGCaagCG-GCGCGUGGCg -3'
miRNA:   3'- uuuuuuuGACUGca-GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 123628 0.7 0.983887
Target:  5'- gAAGucGACUG-CGcCGUGaACGUGGCa -3'
miRNA:   3'- -UUUuuUUGACuGCaGCACgUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 122070 0.66 0.999659
Target:  5'- --cGGAugUGcCG-CGUGCGCuUGGCc -3'
miRNA:   3'- uuuUUUugACuGCaGCACGUGcACCG- -5'
6756 3' -47.4 NC_001875.2 + 121979 0.68 0.995514
Target:  5'- cAAAAAGCUGGCGg---GCACGUuGCc -3'
miRNA:   3'- uUUUUUUGACUGCagcaCGUGCAcCG- -5'
6756 3' -47.4 NC_001875.2 + 115804 0.71 0.974308
Target:  5'- ----cAGCUG-CGUCGaaacgUGUugGUGGCg -3'
miRNA:   3'- uuuuuUUGACuGCAGC-----ACGugCACCG- -5'
6756 3' -47.4 NC_001875.2 + 112177 0.67 0.998454
Target:  5'- -----cGCUGugGUCcuggGCACGccagGGCa -3'
miRNA:   3'- uuuuuuUGACugCAGca--CGUGCa---CCG- -5'
6756 3' -47.4 NC_001875.2 + 107502 0.66 0.999568
Target:  5'- --uGGAGCUGaACGcCGcgGCACGcuuguUGGCg -3'
miRNA:   3'- uuuUUUUGAC-UGCaGCa-CGUGC-----ACCG- -5'
6756 3' -47.4 NC_001875.2 + 104741 0.68 0.996788
Target:  5'- ---uGAACggGACGggCGUGgGCGUcGGCg -3'
miRNA:   3'- uuuuUUUGa-CUGCa-GCACgUGCA-CCG- -5'
6756 3' -47.4 NC_001875.2 + 103456 0.71 0.971373
Target:  5'- --------cGGCGUCGUGCACGccGCg -3'
miRNA:   3'- uuuuuuugaCUGCAGCACGUGCacCG- -5'
6756 3' -47.4 NC_001875.2 + 103328 0.66 0.999659
Target:  5'- ---cGGGC-GACG-CGUGCGCGacGGCu -3'
miRNA:   3'- uuuuUUUGaCUGCaGCACGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 101317 1.12 0.011173
Target:  5'- cAAAAAAACUGACGUCGUGCACGUGGCg -3'
miRNA:   3'- -UUUUUUUGACUGCAGCACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 101163 0.76 0.822783
Target:  5'- --------cGugGcCGUGCGCGUGGCg -3'
miRNA:   3'- uuuuuuugaCugCaGCACGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 100189 0.66 0.99916
Target:  5'- uGAAAAGCgcgcCGUUGUGCGacaacuugcuCGUGGCc -3'
miRNA:   3'- uUUUUUUGacu-GCAGCACGU----------GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 100060 0.69 0.992858
Target:  5'- --uGGAGCUGACGgUGcUGCugG-GGCa -3'
miRNA:   3'- uuuUUUUGACUGCaGC-ACGugCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 96967 0.68 0.996788
Target:  5'- cAAGAcGACgcugugGACGUCGUGCGCaaGUuGCg -3'
miRNA:   3'- -UUUUuUUGa-----CUGCAGCACGUG--CAcCG- -5'
6756 3' -47.4 NC_001875.2 + 93645 0.66 0.999457
Target:  5'- ------cCUGcACGUCGUGCugG-GGa -3'
miRNA:   3'- uuuuuuuGAC-UGCAGCACGugCaCCg -5'
6756 3' -47.4 NC_001875.2 + 92511 0.74 0.922318
Target:  5'- --cAAAACgGGCGcUCGUGCGCGcccGGCg -3'
miRNA:   3'- uuuUUUUGaCUGC-AGCACGUGCa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.