Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6756 | 3' | -47.4 | NC_001875.2 | + | 37041 | 0.68 | 0.996195 |
Target: 5'- --uGAAGCUGACGUgCGUGC-UGUG-Cu -3' miRNA: 3'- uuuUUUUGACUGCA-GCACGuGCACcG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 121979 | 0.68 | 0.995514 |
Target: 5'- cAAAAAGCUGGCGg---GCACGUuGCc -3' miRNA: 3'- uUUUUUUGACUGCagcaCGUGCAcCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 2281 | 0.68 | 0.995514 |
Target: 5'- ------gUUGACGUCGUgaugcgcgcGCGcCGUGGCc -3' miRNA: 3'- uuuuuuuGACUGCAGCA---------CGU-GCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 41057 | 0.68 | 0.994737 |
Target: 5'- ---cGAGCggcGugGUCGUGCACGccguaaGGUa -3' miRNA: 3'- uuuuUUUGa--CugCAGCACGUGCa-----CCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 22314 | 0.68 | 0.994737 |
Target: 5'- ---uAAACUGua-UCGUGUACGUGGg -3' miRNA: 3'- uuuuUUUGACugcAGCACGUGCACCg -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 440 | 0.69 | 0.993855 |
Target: 5'- ---cGAGCgUGcCGUCGUGCACc-GGCg -3' miRNA: 3'- uuuuUUUG-ACuGCAGCACGUGcaCCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 100060 | 0.69 | 0.992858 |
Target: 5'- --uGGAGCUGACGgUGcUGCugG-GGCa -3' miRNA: 3'- uuuUUUUGACUGCaGC-ACGugCaCCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 60538 | 0.69 | 0.991735 |
Target: 5'- ----cAACU--UGUCGgccagGCACGUGGCg -3' miRNA: 3'- uuuuuUUGAcuGCAGCa----CGUGCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 18037 | 0.69 | 0.991735 |
Target: 5'- -----cAUUGACGUgcaaugCGacaUGCGCGUGGCg -3' miRNA: 3'- uuuuuuUGACUGCA------GC---ACGUGCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 62524 | 0.7 | 0.989074 |
Target: 5'- ------uUUGACGUCGacuuggacgcuUGCGCGuUGGCa -3' miRNA: 3'- uuuuuuuGACUGCAGC-----------ACGUGC-ACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 36649 | 0.7 | 0.985789 |
Target: 5'- -uGAAGAUggccGCGUCGUGCGCGcUGaGCu -3' miRNA: 3'- uuUUUUUGac--UGCAGCACGUGC-AC-CG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 50487 | 0.7 | 0.983887 |
Target: 5'- ----cGGCcGGCG-CGUGCGCGcGGCa -3' miRNA: 3'- uuuuuUUGaCUGCaGCACGUGCaCCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 123628 | 0.7 | 0.983887 |
Target: 5'- gAAGucGACUG-CGcCGUGaACGUGGCa -3' miRNA: 3'- -UUUuuUUGACuGCaGCACgUGCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 75584 | 0.7 | 0.981797 |
Target: 5'- -----cGCUGGCGUCG-GCgucgGCGaUGGCg -3' miRNA: 3'- uuuuuuUGACUGCAGCaCG----UGC-ACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 89871 | 0.7 | 0.981577 |
Target: 5'- aGAAcgGGCUGGaGUuuaucaaguuggaCGUGUACGUGGCg -3' miRNA: 3'- -UUUuuUUGACUgCA-------------GCACGUGCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 9696 | 0.71 | 0.974308 |
Target: 5'- --uGGGGCUcGcCGUCGUGCGCGccGGCc -3' miRNA: 3'- uuuUUUUGA-CuGCAGCACGUGCa-CCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 89777 | 0.71 | 0.974308 |
Target: 5'- ----cGGC-GACGcgcUCGUGCACGUGcGCg -3' miRNA: 3'- uuuuuUUGaCUGC---AGCACGUGCAC-CG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 115804 | 0.71 | 0.974308 |
Target: 5'- ----cAGCUG-CGUCGaaacgUGUugGUGGCg -3' miRNA: 3'- uuuuuUUGACuGCAGC-----ACGugCACCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 54303 | 0.71 | 0.974308 |
Target: 5'- cGAAGuAGCUGGgcUCGUGCACGgccguggGGCa -3' miRNA: 3'- -UUUUuUUGACUgcAGCACGUGCa------CCG- -5' |
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6756 | 3' | -47.4 | NC_001875.2 | + | 36488 | 0.71 | 0.971373 |
Target: 5'- -----cGCcGACG-CGUGCACGUGcGCc -3' miRNA: 3'- uuuuuuUGaCUGCaGCACGUGCAC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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