miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 79291 0.67 0.998964
Target:  5'- -------gUGGCGcgCGUGCGCGcauacUGGCg -3'
miRNA:   3'- uuuuuuugACUGCa-GCACGUGC-----ACCG- -5'
6756 3' -47.4 NC_001875.2 + 43860 0.67 0.998731
Target:  5'- -----cGCgGGCGUCGcGUACGcgGGCg -3'
miRNA:   3'- uuuuuuUGaCUGCAGCaCGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 17769 0.67 0.998731
Target:  5'- -----cGCaGACGUCGgaaacuaGCGUGGCg -3'
miRNA:   3'- uuuuuuUGaCUGCAGCacg----UGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 79850 0.67 0.998731
Target:  5'- ----cAGCUGGCuaauGUUGgggugGCGCGUGGUc -3'
miRNA:   3'- uuuuuUUGACUG----CAGCa----CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 63331 0.67 0.998731
Target:  5'- -cAAAAACuuccaccgUGuCGUCGUGCAcgguuuCGUGGUa -3'
miRNA:   3'- uuUUUUUG--------ACuGCAGCACGU------GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 43736 0.67 0.998454
Target:  5'- -uGGAAACgGGCGUUG-GCugGcuUGGCu -3'
miRNA:   3'- uuUUUUUGaCUGCAGCaCGugC--ACCG- -5'
6756 3' -47.4 NC_001875.2 + 131539 0.67 0.998454
Target:  5'- --cGGAGCgcgGACGagGUGCugGaccUGGCc -3'
miRNA:   3'- uuuUUUUGa--CUGCagCACGugC---ACCG- -5'
6756 3' -47.4 NC_001875.2 + 88488 0.67 0.998454
Target:  5'- cGAGcGACUGgagcgcaaguACGUgGUGCGCGgcGGCa -3'
miRNA:   3'- uUUUuUUGAC----------UGCAgCACGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 9746 0.67 0.998454
Target:  5'- ----cGACUGuCGUUGUaCGCGaUGGCg -3'
miRNA:   3'- uuuuuUUGACuGCAGCAcGUGC-ACCG- -5'
6756 3' -47.4 NC_001875.2 + 112177 0.67 0.998454
Target:  5'- -----cGCUGugGUCcuggGCACGccagGGCa -3'
miRNA:   3'- uuuuuuUGACugCAGca--CGUGCa---CCG- -5'
6756 3' -47.4 NC_001875.2 + 36331 0.67 0.998129
Target:  5'- --uGGGGCUGuuGCG-CGUGUACGcGGCc -3'
miRNA:   3'- uuuUUUUGAC--UGCaGCACGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 44188 0.67 0.997747
Target:  5'- -----cGCUGAcCGUCG-GCGCGUGa- -3'
miRNA:   3'- uuuuuuUGACU-GCAGCaCGUGCACcg -5'
6756 3' -47.4 NC_001875.2 + 92437 0.68 0.997303
Target:  5'- cAAAAAGCUGGucgcaGUCgGUGCACaggcacgaGUGGCc -3'
miRNA:   3'- uUUUUUUGACUg----CAG-CACGUG--------CACCG- -5'
6756 3' -47.4 NC_001875.2 + 82350 0.68 0.997303
Target:  5'- --uGAAACUGAUGUgaUGUGCAaacuCG-GGCg -3'
miRNA:   3'- uuuUUUUGACUGCA--GCACGU----GCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 40258 0.68 0.997303
Target:  5'- aAGAAAcGCUGAaaacgGUCGcguuuccGUACGUGGCg -3'
miRNA:   3'- -UUUUUuUGACUg----CAGCa------CGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 65760 0.68 0.997303
Target:  5'- --------cGGCGuauUCGUGCGCGgcgGGCg -3'
miRNA:   3'- uuuuuuugaCUGC---AGCACGUGCa--CCG- -5'
6756 3' -47.4 NC_001875.2 + 125006 0.68 0.996788
Target:  5'- ------gUUGGCGUCGgGCACGUugucgacgcGGCg -3'
miRNA:   3'- uuuuuuuGACUGCAGCaCGUGCA---------CCG- -5'
6756 3' -47.4 NC_001875.2 + 96967 0.68 0.996788
Target:  5'- cAAGAcGACgcugugGACGUCGUGCGCaaGUuGCg -3'
miRNA:   3'- -UUUUuUUGa-----CUGCAGCACGUG--CAcCG- -5'
6756 3' -47.4 NC_001875.2 + 124718 0.68 0.996788
Target:  5'- ------cCUGGCaagCG-GCGCGUGGCg -3'
miRNA:   3'- uuuuuuuGACUGca-GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 104741 0.68 0.996788
Target:  5'- ---uGAACggGACGggCGUGgGCGUcGGCg -3'
miRNA:   3'- uuuuUUUGa-CUGCa-GCACgUGCA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.