miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 42743 0.67 0.924244
Target:  5'- cGCGGcGACGCGCAugguGAGCGGcgcGCUCGg- -3'
miRNA:   3'- aCGUU-UUGCGCGU----UUUGCC---CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 53420 0.67 0.924244
Target:  5'- uUGCcgcACGUGCGGuuuuCGGGCuCCGUg -3'
miRNA:   3'- -ACGuuuUGCGCGUUuu--GCCCG-GGCAa -5'
6757 3' -52.9 NC_001875.2 + 91225 0.67 0.924244
Target:  5'- gGCGAGGCGCGUGG--UGGcGCCCa-- -3'
miRNA:   3'- aCGUUUUGCGCGUUuuGCC-CGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 126528 0.67 0.921946
Target:  5'- aGCAGguAGCGCGCAAuggaguggucguCGGGCgCGg- -3'
miRNA:   3'- aCGUU--UUGCGCGUUuu----------GCCCGgGCaa -5'
6757 3' -52.9 NC_001875.2 + 124403 0.67 0.920781
Target:  5'- cGCAAucgccGGCGCGCAGuugcccucgucguUGGGCCCa-- -3'
miRNA:   3'- aCGUU-----UUGCGCGUUuu-----------GCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 117963 0.67 0.91842
Target:  5'- uUGCAgcGAGCGC-CAAAAUGG-CCUGUUg -3'
miRNA:   3'- -ACGU--UUUGCGcGUUUUGCCcGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 6977 0.67 0.91842
Target:  5'- uUGCAGG--GCGCAAAGCGG-CCgGUg -3'
miRNA:   3'- -ACGUUUugCGCGUUUUGCCcGGgCAa -5'
6757 3' -52.9 NC_001875.2 + 70196 0.67 0.91842
Target:  5'- aGUcAAGCgGCGUGucGCGGGCCaCGUUa -3'
miRNA:   3'- aCGuUUUG-CGCGUuuUGCCCGG-GCAA- -5'
6757 3' -52.9 NC_001875.2 + 68073 0.67 0.916622
Target:  5'- aGUGAAACGUGUAgucgccGAGCGcaauuucauuguaaGGCCCGUUg -3'
miRNA:   3'- aCGUUUUGCGCGU------UUUGC--------------CCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 125420 0.67 0.912336
Target:  5'- cGCAAAugGUG-AAGAUGGGCuuGc- -3'
miRNA:   3'- aCGUUUugCGCgUUUUGCCCGggCaa -5'
6757 3' -52.9 NC_001875.2 + 39930 0.67 0.912336
Target:  5'- aGCGGccuGCGCGCAAuuugcgcGCGGuuGCCCGa- -3'
miRNA:   3'- aCGUUu--UGCGCGUUu------UGCC--CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 112652 0.67 0.912336
Target:  5'- uUGCGuc-CGUGCAAucGCGGuGCCCGc- -3'
miRNA:   3'- -ACGUuuuGCGCGUUu-UGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 19227 0.67 0.912336
Target:  5'- cGCcguGCGCGaguuuguggaaGAGACGGGCCgGUUc -3'
miRNA:   3'- aCGuuuUGCGCg----------UUUUGCCCGGgCAA- -5'
6757 3' -52.9 NC_001875.2 + 108941 0.67 0.912336
Target:  5'- gGCGuuGCGCaGCAGGAUGcGGCCgUGUg -3'
miRNA:   3'- aCGUuuUGCG-CGUUUUGC-CCGG-GCAa -5'
6757 3' -52.9 NC_001875.2 + 110575 0.67 0.91046
Target:  5'- aUGCAAcggcagauguacguGAUGCGCA--ACGcGCCCGUg -3'
miRNA:   3'- -ACGUU--------------UUGCGCGUuuUGCcCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 43090 0.68 0.905992
Target:  5'- aGCGAAucaauuUGCGC-AAACGGGCCgugcuCGUUa -3'
miRNA:   3'- aCGUUUu-----GCGCGuUUUGCCCGG-----GCAA- -5'
6757 3' -52.9 NC_001875.2 + 63133 0.68 0.905992
Target:  5'- gGCcGGGCGCGCGGccggcgcACGGGUCCa-- -3'
miRNA:   3'- aCGuUUUGCGCGUUu------UGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 69232 0.68 0.905343
Target:  5'- gGCGAcGCGCGCugugccGAcuugcccgacggcACGGGCCgGUUa -3'
miRNA:   3'- aCGUUuUGCGCGu-----UU-------------UGCCCGGgCAA- -5'
6757 3' -52.9 NC_001875.2 + 118423 0.68 0.899391
Target:  5'- -aCGGGGCGUuuuGUuuuAACGGGCCCGUg -3'
miRNA:   3'- acGUUUUGCG---CGuu-UUGCCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 118621 0.68 0.899391
Target:  5'- uUGuCAAcauACGgGCGAugaaGGGCCCGUUg -3'
miRNA:   3'- -AC-GUUu--UGCgCGUUuug-CCCGGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.