miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 60405 0.66 0.944922
Target:  5'- uUGCGAGcUGCGCAAAACcGGUuuGa- -3'
miRNA:   3'- -ACGUUUuGCGCGUUUUGcCCGggCaa -5'
6757 3' -52.9 NC_001875.2 + 110908 0.66 0.942086
Target:  5'- uUGCAuAugGUGCucaggcugcgaggggGAAACGGGCUCa-- -3'
miRNA:   3'- -ACGUuUugCGCG---------------UUUUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 39146 0.66 0.942086
Target:  5'- gGCGAugauggccauuuuggGGC-CGCGAGGCGGGCCgGc- -3'
miRNA:   3'- aCGUU---------------UUGcGCGUUUUGCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 81477 0.66 0.940143
Target:  5'- cGCGgucAGugGCGC---GCGcGGCCCGa- -3'
miRNA:   3'- aCGU---UUugCGCGuuuUGC-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 114908 0.66 0.940143
Target:  5'- gGCGcAACGCGCcGAugcgcucaaacACGaGGCCCGc- -3'
miRNA:   3'- aCGUuUUGCGCGuUU-----------UGC-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 88723 0.66 0.940143
Target:  5'- cGCAu-GCGCGCcgaguuuAACGagcacGGCCCGUUu -3'
miRNA:   3'- aCGUuuUGCGCGuu-----UUGC-----CCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 42963 0.66 0.938659
Target:  5'- cGCGcAGCGCGCcaacaaugcuuugaAAGGCGGcGgCCGUUg -3'
miRNA:   3'- aCGUuUUGCGCG--------------UUUUGCC-CgGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 39327 0.67 0.935105
Target:  5'- cGCcGGGCGCGCAcGAGC--GCCCGUUu -3'
miRNA:   3'- aCGuUUUGCGCGU-UUUGccCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 16889 0.67 0.935105
Target:  5'- aUGCGu-ACGCGCA--GCGGcGCCgCGa- -3'
miRNA:   3'- -ACGUuuUGCGCGUuuUGCC-CGG-GCaa -5'
6757 3' -52.9 NC_001875.2 + 99657 0.67 0.935105
Target:  5'- cGCAauGAACGUGUucAAACGGuGCUCGg- -3'
miRNA:   3'- aCGU--UUUGCGCGu-UUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 110280 0.67 0.935105
Target:  5'- cGCGGAGCGCGCG-GGCuGcCCCGUc -3'
miRNA:   3'- aCGUUUUGCGCGUuUUGcCcGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 127893 0.67 0.934587
Target:  5'- gGUuuguGGGCGCGCAuuugaacAAGCGGGCCg--- -3'
miRNA:   3'- aCGu---UUUGCGCGU-------UUUGCCCGGgcaa -5'
6757 3' -52.9 NC_001875.2 + 95042 0.67 0.933542
Target:  5'- cGCGuAACGCGCAccGugcagauugacgccGACGGGUuuGUg -3'
miRNA:   3'- aCGUuUUGCGCGU--U--------------UUGCCCGggCAa -5'
6757 3' -52.9 NC_001875.2 + 87443 0.67 0.929805
Target:  5'- uUGCAGuGCGCGCGcgccGACGuGCCCa-- -3'
miRNA:   3'- -ACGUUuUGCGCGUu---UUGCcCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 38206 0.67 0.929805
Target:  5'- aGCAcGACGUGCAGGACGuGCaCGUc -3'
miRNA:   3'- aCGUuUUGCGCGUUUUGCcCGgGCAa -5'
6757 3' -52.9 NC_001875.2 + 64292 0.67 0.929805
Target:  5'- gUGCGAcGCGUgcuGCAAGGCGGaGCuCCGc- -3'
miRNA:   3'- -ACGUUuUGCG---CGUUUUGCC-CG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 106023 0.67 0.929805
Target:  5'- gGCGuuGCaGUGCucGGCGGGCgCCGa- -3'
miRNA:   3'- aCGUuuUG-CGCGuuUUGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 34603 0.67 0.929805
Target:  5'- -aCGAAugGCGCAaacagGAGCG-GCCCGa- -3'
miRNA:   3'- acGUUUugCGCGU-----UUUGCcCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 42743 0.67 0.924244
Target:  5'- cGCGGcGACGCGCAugguGAGCGGcgcGCUCGg- -3'
miRNA:   3'- aCGUU-UUGCGCGU----UUUGCC---CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 53420 0.67 0.924244
Target:  5'- uUGCcgcACGUGCGGuuuuCGGGCuCCGUg -3'
miRNA:   3'- -ACGuuuUGCGCGUUuu--GCCCG-GGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.