miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 80899 0.72 0.691295
Target:  5'- aGCAAGuCGCGC-GAGCGGcGCCUGa- -3'
miRNA:   3'- aCGUUUuGCGCGuUUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 100268 0.72 0.700782
Target:  5'- gGCG--GCGCGCAAGGaagccgcCGGGCCCa-- -3'
miRNA:   3'- aCGUuuUGCGCGUUUU-------GCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 41996 0.72 0.700782
Target:  5'- aGCAcgGCG-GUGAAaaaaucgGCGGGCCCGUUa -3'
miRNA:   3'- aCGUuuUGCgCGUUU-------UGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 30934 0.72 0.711263
Target:  5'- gGCGAGcgucuccGCGCGCu--GCGGcGCCCGg- -3'
miRNA:   3'- aCGUUU-------UGCGCGuuuUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 116322 0.72 0.712307
Target:  5'- uUGCAAAcUGCGCAAuaauugccuuuGACGGGCCUc-- -3'
miRNA:   3'- -ACGUUUuGCGCGUU-----------UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 39647 0.72 0.722706
Target:  5'- aGCGAAccGCGCGCGAGuuUGGGCCgGc- -3'
miRNA:   3'- aCGUUU--UGCGCGUUUu-GCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 119432 0.72 0.722706
Target:  5'- cUGCuuGGCGCGCGgcAAACaGcGGCCCGa- -3'
miRNA:   3'- -ACGuuUUGCGCGU--UUUG-C-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 57673 0.72 0.722706
Target:  5'- cGCAAAACGCGUccaagcuggcgGcgGCGGGCgCCGc- -3'
miRNA:   3'- aCGUUUUGCGCG-----------UuuUGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 31552 0.72 0.722706
Target:  5'- uUGCAc-GCGCuGCAGGuUGGGCCCGg- -3'
miRNA:   3'- -ACGUuuUGCG-CGUUUuGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 93238 0.72 0.722706
Target:  5'- aGCGGugcgcuccucGACGCGCA--GCuGGCCCGUg -3'
miRNA:   3'- aCGUU----------UUGCGCGUuuUGcCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 19855 0.72 0.722706
Target:  5'- cGCAAGacucggccGCGuCGCGGcGCGGGCgCCGUUu -3'
miRNA:   3'- aCGUUU--------UGC-GCGUUuUGCCCG-GGCAA- -5'
6757 3' -52.9 NC_001875.2 + 92500 0.71 0.733019
Target:  5'- cGUGAuGgGCGCAAAACGGGCgCuCGUg -3'
miRNA:   3'- aCGUUuUgCGCGUUUUGCCCG-G-GCAa -5'
6757 3' -52.9 NC_001875.2 + 98790 0.71 0.743237
Target:  5'- cGCGGAAcgcuauCGCGCGGcGCGGcGCCCGc- -3'
miRNA:   3'- aCGUUUU------GCGCGUUuUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 31923 0.71 0.743237
Target:  5'- cUGCAc--CGCGC---GCGGGCCCGc- -3'
miRNA:   3'- -ACGUuuuGCGCGuuuUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 69346 0.71 0.743237
Target:  5'- cGaCGAAACGCGCAGucAGCGGcgugcGCCCGc- -3'
miRNA:   3'- aC-GUUUUGCGCGUU--UUGCC-----CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 83321 0.71 0.743237
Target:  5'- cGCGGGGCGCGCGccGGGCGGcGCgCCa-- -3'
miRNA:   3'- aCGUUUUGCGCGU--UUUGCC-CG-GGcaa -5'
6757 3' -52.9 NC_001875.2 + 54186 0.71 0.753349
Target:  5'- cGCAAAACGCGUcgccCGGGUUCGg- -3'
miRNA:   3'- aCGUUUUGCGCGuuuuGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 42509 0.71 0.753349
Target:  5'- cGCGu-GCGcCGCAAAGCuGaGGCCCGUc -3'
miRNA:   3'- aCGUuuUGC-GCGUUUUG-C-CCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 79129 0.71 0.763343
Target:  5'- gGCGgcGGGCGcCGCG--GCGGGCUCGUUu -3'
miRNA:   3'- aCGU--UUUGC-GCGUuuUGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 89817 0.71 0.763343
Target:  5'- gGCAGaucGugGUGCcgguuAACGGGCCCGc- -3'
miRNA:   3'- aCGUU---UugCGCGuu---UUGCCCGGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.