miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 29406 0.72 0.677517
Target:  5'- uUGCAAAACGCGCA--GCGcaccucgucgccgcGGCCCa-- -3'
miRNA:   3'- -ACGUUUUGCGCGUuuUGC--------------CCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 30030 0.66 0.949444
Target:  5'- aGCAAAACG-GCuuGGGCGGGCUguuugCGUg -3'
miRNA:   3'- aCGUUUUGCgCGu-UUUGCCCGG-----GCAa -5'
6757 3' -52.9 NC_001875.2 + 30873 0.75 0.552879
Target:  5'- cUGCAGcgcgGGCGCuugcuuaagagGCAuAAACGGGCCCGUUu -3'
miRNA:   3'- -ACGUU----UUGCG-----------CGU-UUUGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 30934 0.72 0.711263
Target:  5'- gGCGAGcgucuccGCGCGCu--GCGGcGCCCGg- -3'
miRNA:   3'- aCGUUU-------UGCGCGuuuUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 31552 0.72 0.722706
Target:  5'- uUGCAc-GCGCuGCAGGuUGGGCCCGg- -3'
miRNA:   3'- -ACGUuuUGCG-CGUUUuGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 31923 0.71 0.743237
Target:  5'- cUGCAc--CGCGC---GCGGGCCCGc- -3'
miRNA:   3'- -ACGUuuuGCGCGuuuUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 32057 0.7 0.82027
Target:  5'- gUGCGcGACGCguaccGCAAAAUGGcGCUCGUg -3'
miRNA:   3'- -ACGUuUUGCG-----CGUUUUGCC-CGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 32776 0.68 0.87808
Target:  5'- cGCGuccuCGCGCGgcguGGGCGGGCgCCGc- -3'
miRNA:   3'- aCGUuuu-GCGCGU----UUUGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 32867 0.69 0.829158
Target:  5'- aGCGuucACGCGgAAAGCGGcGCCgGUUc -3'
miRNA:   3'- aCGUuu-UGCGCgUUUUGCC-CGGgCAA- -5'
6757 3' -52.9 NC_001875.2 + 33215 0.66 0.944922
Target:  5'- gGCAAAcgcGgGCGCGGGcucgcCGGGCgCCGUUu -3'
miRNA:   3'- aCGUUU---UgCGCGUUUu----GCCCG-GGCAA- -5'
6757 3' -52.9 NC_001875.2 + 34603 0.67 0.929805
Target:  5'- -aCGAAugGCGCAaacagGAGCG-GCCCGa- -3'
miRNA:   3'- acGUUUugCGCGU-----UUUGCcCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 36284 0.68 0.870489
Target:  5'- gGC-GGACGCGCAGGcucCGGGCUCa-- -3'
miRNA:   3'- aCGuUUUGCGCGUUUu--GCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 37684 0.68 0.870489
Target:  5'- gGCGAuGACGCGCAcaAGACGcugauuguGuGCCCGUUg -3'
miRNA:   3'- aCGUU-UUGCGCGU--UUUGC--------C-CGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 38206 0.67 0.929805
Target:  5'- aGCAcGACGUGCAGGACGuGCaCGUc -3'
miRNA:   3'- aCGUuUUGCGCGUUUUGCcCGgGCAa -5'
6757 3' -52.9 NC_001875.2 + 39146 0.66 0.942086
Target:  5'- gGCGAugauggccauuuuggGGC-CGCGAGGCGGGCCgGc- -3'
miRNA:   3'- aCGUU---------------UUGcGCGUUUUGCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 39327 0.67 0.935105
Target:  5'- cGCcGGGCGCGCAcGAGC--GCCCGUUu -3'
miRNA:   3'- aCGuUUUGCGCGU-UUUGccCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 39647 0.72 0.722706
Target:  5'- aGCGAAccGCGCGCGAGuuUGGGCCgGc- -3'
miRNA:   3'- aCGUUU--UGCGCGUUUu-GCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 39930 0.67 0.912336
Target:  5'- aGCGGccuGCGCGCAAuuugcgcGCGGuuGCCCGa- -3'
miRNA:   3'- aCGUUu--UGCGCGUUu------UGCC--CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 39979 0.66 0.949444
Target:  5'- aGCAG---GCGCccuGgGGGCCCGUg -3'
miRNA:   3'- aCGUUuugCGCGuuuUgCCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 40856 0.75 0.532045
Target:  5'- cGcCAAGACGCGCAccGCGGGCgCCa-- -3'
miRNA:   3'- aC-GUUUUGCGCGUuuUGCCCG-GGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.