miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 995 0.73 0.627283
Target:  5'- aGC-AAACGC-CAuugcuGCGGGCCCGUUc -3'
miRNA:   3'- aCGuUUUGCGcGUuu---UGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 1023 0.71 0.77321
Target:  5'- uUGCA--GCGCGU--GGCgGGGCCCGa- -3'
miRNA:   3'- -ACGUuuUGCGCGuuUUG-CCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 3056 0.69 0.83785
Target:  5'- cGUAAGAgGCGCGcAGCGGcGCgCCGg- -3'
miRNA:   3'- aCGUUUUgCGCGUuUUGCC-CG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 6977 0.67 0.91842
Target:  5'- uUGCAGG--GCGCAAAGCGG-CCgGUg -3'
miRNA:   3'- -ACGUUUugCGCGUUUUGCCcGGgCAa -5'
6757 3' -52.9 NC_001875.2 + 7397 0.68 0.899391
Target:  5'- uUGCGcGACGCggucGCAAAACauauuGGGCCCa-- -3'
miRNA:   3'- -ACGUuUUGCG----CGUUUUG-----CCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 10529 0.68 0.870489
Target:  5'- aUGUAGuACGCGUugcagucAAACGGGUCCGc- -3'
miRNA:   3'- -ACGUUuUGCGCGu------UUUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 12180 0.7 0.801941
Target:  5'- aUGCugAGAAUGCGCAGcuUGGGCgCGUa -3'
miRNA:   3'- -ACG--UUUUGCGCGUUuuGCCCGgGCAa -5'
6757 3' -52.9 NC_001875.2 + 13397 0.84 0.180382
Target:  5'- gGCAccAGGCGCGCuugcACGGGCCCGUUa -3'
miRNA:   3'- aCGU--UUUGCGCGuuu-UGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 16889 0.67 0.935105
Target:  5'- aUGCGu-ACGCGCA--GCGGcGCCgCGa- -3'
miRNA:   3'- -ACGUuuUGCGCGUuuUGCC-CGG-GCaa -5'
6757 3' -52.9 NC_001875.2 + 18160 0.66 0.953712
Target:  5'- gUGCGGcGCGCGCGAcgccgccacuguGGCGGuGCCgGc- -3'
miRNA:   3'- -ACGUUuUGCGCGUU------------UUGCC-CGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 18425 0.66 0.944922
Target:  5'- uUGCGuacucgGCGCGAGGCGcGGUCCGc- -3'
miRNA:   3'- -ACGUuuug--CGCGUUUUGC-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 18688 0.7 0.82027
Target:  5'- gGCGAAACGUaCAAGGCGGcGCUgGUg -3'
miRNA:   3'- aCGUUUUGCGcGUUUUGCC-CGGgCAa -5'
6757 3' -52.9 NC_001875.2 + 19056 0.75 0.542429
Target:  5'- gUGCAAAAUGCGCAAcucAGCaGGCuuGUUu -3'
miRNA:   3'- -ACGUUUUGCGCGUU---UUGcCCGggCAA- -5'
6757 3' -52.9 NC_001875.2 + 19227 0.67 0.912336
Target:  5'- cGCcguGCGCGaguuuguggaaGAGACGGGCCgGUUc -3'
miRNA:   3'- aCGuuuUGCGCg----------UUUUGCCCGGgCAA- -5'
6757 3' -52.9 NC_001875.2 + 19855 0.72 0.722706
Target:  5'- cGCAAGacucggccGCGuCGCGGcGCGGGCgCCGUUu -3'
miRNA:   3'- aCGUUU--------UGC-GCGUUuUGCCCG-GGCAA- -5'
6757 3' -52.9 NC_001875.2 + 20793 0.68 0.870489
Target:  5'- aGCcgucGACGCGCAGugcGCGGGCgUCGUc -3'
miRNA:   3'- aCGuu--UUGCGCGUUu--UGCCCG-GGCAa -5'
6757 3' -52.9 NC_001875.2 + 21680 0.66 0.953712
Target:  5'- gGCcAAGCGCGCAcucaAAACGuuGGCCaaCGUUg -3'
miRNA:   3'- aCGuUUUGCGCGU----UUUGC--CCGG--GCAA- -5'
6757 3' -52.9 NC_001875.2 + 21778 0.71 0.77321
Target:  5'- aGCGucucuGCGCGCGAcACGGGuUCCGg- -3'
miRNA:   3'- aCGUuu---UGCGCGUUuUGCCC-GGGCaa -5'
6757 3' -52.9 NC_001875.2 + 24010 0.7 0.792519
Target:  5'- cGCAAGGCGCacCGGGcGCGGGCUCGg- -3'
miRNA:   3'- aCGUUUUGCGc-GUUU-UGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 27688 0.68 0.885431
Target:  5'- aUGUcgGACGCGUcuaucgccacgGGAAUGGGCCCc-- -3'
miRNA:   3'- -ACGuuUUGCGCG-----------UUUUGCCCGGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.