miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 131529 0.75 0.521734
Target:  5'- gGCugGAAGCgGCGCAAAGCGcGCCCGUg -3'
miRNA:   3'- aCG--UUUUG-CGCGUUUUGCcCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 130827 0.75 0.532045
Target:  5'- cGCc--ACGCGCugcaAGAACGGGCCCGc- -3'
miRNA:   3'- aCGuuuUGCGCG----UUUUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 128167 0.66 0.949444
Target:  5'- cUGCAAAaaaacACGCuuuuGCAc-GCGGGCCCa-- -3'
miRNA:   3'- -ACGUUU-----UGCG----CGUuuUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 127893 0.67 0.934587
Target:  5'- gGUuuguGGGCGCGCAuuugaacAAGCGGGCCg--- -3'
miRNA:   3'- aCGu---UUUGCGCGU-------UUUGCCCGGgcaa -5'
6757 3' -52.9 NC_001875.2 + 126528 0.67 0.921946
Target:  5'- aGCAGguAGCGCGCAAuggaguggucguCGGGCgCGg- -3'
miRNA:   3'- aCGUU--UUGCGCGUUuu----------GCCCGgGCaa -5'
6757 3' -52.9 NC_001875.2 + 125640 0.68 0.899391
Target:  5'- cGCAAuuGCGCGCuuuGAAACGGcGCgCGg- -3'
miRNA:   3'- aCGUUu-UGCGCG---UUUUGCC-CGgGCaa -5'
6757 3' -52.9 NC_001875.2 + 125420 0.67 0.912336
Target:  5'- cGCAAAugGUG-AAGAUGGGCuuGc- -3'
miRNA:   3'- aCGUUUugCGCgUUUUGCCCGggCaa -5'
6757 3' -52.9 NC_001875.2 + 124403 0.67 0.920781
Target:  5'- cGCAAucgccGGCGCGCAGuugcccucgucguUGGGCCCa-- -3'
miRNA:   3'- aCGUU-----UUGCGCGUUuu-----------GCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 123334 0.7 0.810277
Target:  5'- uUGCAGuGCGCgGCGcccacacGGACGGcGCCCGg- -3'
miRNA:   3'- -ACGUUuUGCG-CGU-------UUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 122140 0.69 0.862663
Target:  5'- cGCGGccGGCGCGCAcGACGGcgaGCCCc-- -3'
miRNA:   3'- aCGUU--UUGCGCGUuUUGCC---CGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 120736 0.74 0.573951
Target:  5'- uUGCAGcugcGGCGC-CGAGACGGGgCCGUg -3'
miRNA:   3'- -ACGUU----UUGCGcGUUUUGCCCgGGCAa -5'
6757 3' -52.9 NC_001875.2 + 119432 0.72 0.722706
Target:  5'- cUGCuuGGCGCGCGgcAAACaGcGGCCCGa- -3'
miRNA:   3'- -ACGuuUUGCGCGU--UUUG-C-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 118621 0.68 0.899391
Target:  5'- uUGuCAAcauACGgGCGAugaaGGGCCCGUUg -3'
miRNA:   3'- -AC-GUUu--UGCgCGUUuug-CCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 118423 0.68 0.899391
Target:  5'- -aCGGGGCGUuuuGUuuuAACGGGCCCGUg -3'
miRNA:   3'- acGUUUUGCG---CGuu-UUGCCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 117963 0.67 0.91842
Target:  5'- uUGCAgcGAGCGC-CAAAAUGG-CCUGUUg -3'
miRNA:   3'- -ACGU--UUUGCGcGUUUUGCCcGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 117341 0.7 0.811194
Target:  5'- cGCGGcGCGgGCGAAccgGCGGGCCgGc- -3'
miRNA:   3'- aCGUUuUGCgCGUUU---UGCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 117222 0.75 0.511501
Target:  5'- aGCGAGGCGCGCcaGGAACaGGCCCc-- -3'
miRNA:   3'- aCGUUUUGCGCG--UUUUGcCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 116322 0.72 0.712307
Target:  5'- uUGCAAAcUGCGCAAuaauugccuuuGACGGGCCUc-- -3'
miRNA:   3'- -ACGUUUuGCGCGUU-----------UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 114908 0.66 0.940143
Target:  5'- gGCGcAACGCGCcGAugcgcucaaacACGaGGCCCGc- -3'
miRNA:   3'- aCGUuUUGCGCGuUU-----------UGC-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 113547 0.7 0.811194
Target:  5'- gGCcaauAAGCGCGCGAAGCGGcCuuGUg -3'
miRNA:   3'- aCGu---UUUGCGCGUUUUGCCcGggCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.