miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 79129 0.71 0.763343
Target:  5'- gGCGgcGGGCGcCGCG--GCGGGCUCGUUu -3'
miRNA:   3'- aCGU--UUUGC-GCGUuuUGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 100268 0.72 0.700782
Target:  5'- gGCG--GCGCGCAAGGaagccgcCGGGCCCa-- -3'
miRNA:   3'- aCGUuuUGCGCGUUUU-------GCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 116322 0.72 0.712307
Target:  5'- uUGCAAAcUGCGCAAuaauugccuuuGACGGGCCUc-- -3'
miRNA:   3'- -ACGUUUuGCGCGUU-----------UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 39647 0.72 0.722706
Target:  5'- aGCGAAccGCGCGCGAGuuUGGGCCgGc- -3'
miRNA:   3'- aCGUUU--UGCGCGUUUu-GCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 92500 0.71 0.733019
Target:  5'- cGUGAuGgGCGCAAAACGGGCgCuCGUg -3'
miRNA:   3'- aCGUUuUgCGCGUUUUGCCCG-G-GCAa -5'
6757 3' -52.9 NC_001875.2 + 31923 0.71 0.743237
Target:  5'- cUGCAc--CGCGC---GCGGGCCCGc- -3'
miRNA:   3'- -ACGUuuuGCGCGuuuUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 98790 0.71 0.743237
Target:  5'- cGCGGAAcgcuauCGCGCGGcGCGGcGCCCGc- -3'
miRNA:   3'- aCGUUUU------GCGCGUUuUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 42509 0.71 0.753349
Target:  5'- cGCGu-GCGcCGCAAAGCuGaGGCCCGUc -3'
miRNA:   3'- aCGUuuUGC-GCGUUUUG-C-CCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 54186 0.71 0.753349
Target:  5'- cGCAAAACGCGUcgccCGGGUUCGg- -3'
miRNA:   3'- aCGUUUUGCGCGuuuuGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 41996 0.72 0.700782
Target:  5'- aGCAcgGCG-GUGAAaaaaucgGCGGGCCCGUUa -3'
miRNA:   3'- aCGUuuUGCgCGUUU-------UGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 29406 0.72 0.677517
Target:  5'- uUGCAAAACGCGCA--GCGcaccucgucgccgcGGCCCa-- -3'
miRNA:   3'- -ACGUUUUGCGCGUuuUGC--------------CCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 53903 0.72 0.670067
Target:  5'- cGCAAAuaauuguggGCGCGCcguuGCGGGCgCGUUg -3'
miRNA:   3'- aCGUUU---------UGCGCGuuu-UGCCCGgGCAA- -5'
6757 3' -52.9 NC_001875.2 + 131529 0.75 0.521734
Target:  5'- gGCugGAAGCgGCGCAAAGCGcGCCCGUg -3'
miRNA:   3'- aCG--UUUUG-CGCGUUUUGCcCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 40856 0.75 0.532045
Target:  5'- cGcCAAGACGCGCAccGCGGGCgCCa-- -3'
miRNA:   3'- aC-GUUUUGCGCGUuuUGCCCG-GGcaa -5'
6757 3' -52.9 NC_001875.2 + 80627 0.75 0.53619
Target:  5'- cGCGGAACGCGCGcucGACGGGCggcgccagaaccgcgCCGUc -3'
miRNA:   3'- aCGUUUUGCGCGUu--UUGCCCG---------------GGCAa -5'
6757 3' -52.9 NC_001875.2 + 19056 0.75 0.542429
Target:  5'- gUGCAAAAUGCGCAAcucAGCaGGCuuGUUu -3'
miRNA:   3'- -ACGUUUUGCGCGUU---UUGcCCGggCAA- -5'
6757 3' -52.9 NC_001875.2 + 30873 0.75 0.552879
Target:  5'- cUGCAGcgcgGGCGCuugcuuaagagGCAuAAACGGGCCCGUUu -3'
miRNA:   3'- -ACGUU----UUGCG-----------CGU-UUUGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 50874 0.74 0.605878
Target:  5'- uUGCucGGGCgGCGCGGccacgaaaucuuGACGGGCCCGUc -3'
miRNA:   3'- -ACGu-UUUG-CGCGUU------------UUGCCCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 54104 0.73 0.616574
Target:  5'- aUGCGcuGCcaGCGCAcguacaugacAAACGGGCCCGg- -3'
miRNA:   3'- -ACGUuuUG--CGCGU----------UUUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 995 0.73 0.627283
Target:  5'- aGC-AAACGC-CAuugcuGCGGGCCCGUUc -3'
miRNA:   3'- aCGuUUUGCGcGUuu---UGCCCGGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.