miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 100935 1.05 0.007377
Target:  5'- cUGCAAAACGCGCAAAACGGGCCCGUUu -3'
miRNA:   3'- -ACGUUUUGCGCGUUUUGCCCGGGCAA- -5'
6757 3' -52.9 NC_001875.2 + 83321 0.71 0.743237
Target:  5'- cGCGGGGCGCGCGccGGGCGGcGCgCCa-- -3'
miRNA:   3'- aCGUUUUGCGCGU--UUUGCC-CG-GGcaa -5'
6757 3' -52.9 NC_001875.2 + 104944 0.71 0.767306
Target:  5'- aGCAGAACGCGCGcguAACGcccaacauauuuuauGGCCUGa- -3'
miRNA:   3'- aCGUUUUGCGCGUu--UUGC---------------CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 70045 0.66 0.95773
Target:  5'- gUGCGGu-CGCuGCGAcgGACGGGCCUc-- -3'
miRNA:   3'- -ACGUUuuGCG-CGUU--UUGCCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 117222 0.75 0.511501
Target:  5'- aGCGAGGCGCGCcaGGAACaGGCCCc-- -3'
miRNA:   3'- aCGUUUUGCGCG--UUUUGcCCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 130827 0.75 0.532045
Target:  5'- cGCc--ACGCGCugcaAGAACGGGCCCGc- -3'
miRNA:   3'- aCGuuuUGCGCG----UUUUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 86243 0.74 0.605878
Target:  5'- gUGCu--GCGCGcCGGAGuCGGGCCCGc- -3'
miRNA:   3'- -ACGuuuUGCGC-GUUUU-GCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 98604 0.72 0.691295
Target:  5'- aGCGccGCGC-CGAAACGGcGCCCGg- -3'
miRNA:   3'- aCGUuuUGCGcGUUUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 31552 0.72 0.722706
Target:  5'- uUGCAc-GCGCuGCAGGuUGGGCCCGg- -3'
miRNA:   3'- -ACGUuuUGCG-CGUUUuGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 69346 0.71 0.743237
Target:  5'- cGaCGAAACGCGCAGucAGCGGcgugcGCCCGc- -3'
miRNA:   3'- aC-GUUUUGCGCGUU--UUGCC-----CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 19855 0.72 0.722706
Target:  5'- cGCAAGacucggccGCGuCGCGGcGCGGGCgCCGUUu -3'
miRNA:   3'- aCGUUU--------UGC-GCGUUuUGCCCG-GGCAA- -5'
6757 3' -52.9 NC_001875.2 + 30934 0.72 0.711263
Target:  5'- gGCGAGcgucuccGCGCGCu--GCGGcGCCCGg- -3'
miRNA:   3'- aCGUUU-------UGCGCGuuuUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 90961 0.77 0.404608
Target:  5'- cGCGAAGCGCGCGugcaccaGGAUGGcGCCCGc- -3'
miRNA:   3'- aCGUUUUGCGCGU-------UUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 57673 0.72 0.722706
Target:  5'- cGCAAAACGCGUccaagcuggcgGcgGCGGGCgCCGc- -3'
miRNA:   3'- aCGUUUUGCGCG-----------UuuUGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 86374 0.76 0.481327
Target:  5'- cGCuAGACGCGCGGcuGCGGGCgCCGa- -3'
miRNA:   3'- aCGuUUUGCGCGUUu-UGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 80899 0.72 0.691295
Target:  5'- aGCAAGuCGCGC-GAGCGGcGCCUGa- -3'
miRNA:   3'- aCGUUUuGCGCGuUUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 119432 0.72 0.722706
Target:  5'- cUGCuuGGCGCGCGgcAAACaGcGGCCCGa- -3'
miRNA:   3'- -ACGuuUUGCGCGU--UUUG-C-CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 89817 0.71 0.763343
Target:  5'- gGCAGaucGugGUGCcgguuAACGGGCCCGc- -3'
miRNA:   3'- aCGUU---UugCGCGuu---UUGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 76892 0.76 0.491292
Target:  5'- gGCAAAcgcGCGCGCAAAgggGCGGcGCCCa-- -3'
miRNA:   3'- aCGUUU---UGCGCGUUU---UGCC-CGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 120736 0.74 0.573951
Target:  5'- uUGCAGcugcGGCGC-CGAGACGGGgCCGUg -3'
miRNA:   3'- -ACGUU----UUGCGcGUUUUGCCCgGGCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.