Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6759 | 5' | -48.9 | NC_001875.2 | + | 22094 | 0.67 | 0.994146 |
Target: 5'- gUUUGUCuggGCAaaaaCCUUAUCGUCAACa- -3' miRNA: 3'- -AAACAGu--UGUc---GGAGUAGCAGUUGcc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 114276 | 0.68 | 0.990937 |
Target: 5'- -aUGUgCGGCAGCCgcUCG-CGcCAACGGu -3' miRNA: 3'- aaACA-GUUGUCGG--AGUaGCaGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 55351 | 0.68 | 0.990937 |
Target: 5'- --cGggGGCGccGCCUCGUCGUCGuccGCGGc -3' miRNA: 3'- aaaCagUUGU--CGGAGUAGCAGU---UGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 99894 | 0.68 | 0.990937 |
Target: 5'- --cGUCGccgGCAGCCUCGagCG-CAACGa -3' miRNA: 3'- aaaCAGU---UGUCGGAGUa-GCaGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 108158 | 0.68 | 0.98467 |
Target: 5'- aUUGggCcGCAGCCUgGUCGUgCAcACGGa -3' miRNA: 3'- aAACa-GuUGUCGGAgUAGCA-GU-UGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 111062 | 0.69 | 0.982682 |
Target: 5'- --cGUCGACGGCUUCuaCGUgGACGa -3' miRNA: 3'- aaaCAGUUGUCGGAGuaGCAgUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 47247 | 0.69 | 0.982682 |
Target: 5'- --cGUguACAGCCUCGUgcacCAGCGGg -3' miRNA: 3'- aaaCAguUGUCGGAGUAgca-GUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 121121 | 0.69 | 0.980506 |
Target: 5'- --cGUCGACAGaCUCGUUgaGUCGGCGu -3' miRNA: 3'- aaaCAGUUGUCgGAGUAG--CAGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 128903 | 0.71 | 0.941727 |
Target: 5'- -gUGgaaGACAGCUUCcccAUCGUCAACGa -3' miRNA: 3'- aaACag-UUGUCGGAG---UAGCAGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 33744 | 0.72 | 0.907425 |
Target: 5'- -cUGUUGACAaacGCgUCGUUGUCGAUGGg -3' miRNA: 3'- aaACAGUUGU---CGgAGUAGCAGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 99851 | 0.74 | 0.838429 |
Target: 5'- gUUUGUCAcCGGCCUCAUCaacgCGACGc -3' miRNA: 3'- -AAACAGUuGUCGGAGUAGca--GUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 12951 | 0.76 | 0.75247 |
Target: 5'- cUUGU-GACGGUCUCGUCG-CGGCGGg -3' miRNA: 3'- aAACAgUUGUCGGAGUAGCaGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 91762 | 0.78 | 0.624136 |
Target: 5'- --cGUCAgcgccGCGGCCUCGUCGUaguGCGGc -3' miRNA: 3'- aaaCAGU-----UGUCGGAGUAGCAgu-UGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 4478 | 0.79 | 0.613246 |
Target: 5'- --cGUCGACAGCCUCAaaGuacUCGGCGGg -3' miRNA: 3'- aaaCAGUUGUCGGAGUagC---AGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 98110 | 1.1 | 0.00987 |
Target: 5'- gUUUGUCAACAGCCUCAUCGUCAACGGg -3' miRNA: 3'- -AAACAGUUGUCGGAGUAGCAGUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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