miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6759 5' -48.9 NC_001875.2 + 23239 0.66 0.997424
Target:  5'- --gGUUAGCAGCUg-GUCGgagaacagCGACGGg -3'
miRNA:   3'- aaaCAGUUGUCGGagUAGCa-------GUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 66529 0.66 0.997846
Target:  5'- ---aUCuuUAGCCUCGUCGaggaGGCGGa -3'
miRNA:   3'- aaacAGuuGUCGGAGUAGCag--UUGCC- -5'
6759 5' -48.9 NC_001875.2 + 101594 0.66 0.998209
Target:  5'- -cUGUCGACcuGGCCag--CGUCAACGc -3'
miRNA:   3'- aaACAGUUG--UCGGaguaGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 58079 0.67 0.994985
Target:  5'- -cUGUCGGCGGUCUggcgcgugcgcaCGUUGUUAGCGu -3'
miRNA:   3'- aaACAGUUGUCGGA------------GUAGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 45299 0.67 0.994985
Target:  5'- ---cUC-GCAGCCagaCGUCGUCAACGa -3'
miRNA:   3'- aaacAGuUGUCGGa--GUAGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 22094 0.67 0.994146
Target:  5'- gUUUGUCuggGCAaaaaCCUUAUCGUCAACa- -3'
miRNA:   3'- -AAACAGu--UGUc---GGAGUAGCAGUUGcc -5'
6759 5' -48.9 NC_001875.2 + 98110 1.1 0.00987
Target:  5'- gUUUGUCAACAGCCUCAUCGUCAACGGg -3'
miRNA:   3'- -AAACAGUUGUCGGAGUAGCAGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 4478 0.79 0.613246
Target:  5'- --cGUCGACAGCCUCAaaGuacUCGGCGGg -3'
miRNA:   3'- aaaCAGUUGUCGGAGUagC---AGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 91762 0.78 0.624136
Target:  5'- --cGUCAgcgccGCGGCCUCGUCGUaguGCGGc -3'
miRNA:   3'- aaaCAGU-----UGUCGGAGUAGCAgu-UGCC- -5'
6759 5' -48.9 NC_001875.2 + 128903 0.71 0.941727
Target:  5'- -gUGgaaGACAGCUUCcccAUCGUCAACGa -3'
miRNA:   3'- aaACag-UUGUCGGAG---UAGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 121121 0.69 0.980506
Target:  5'- --cGUCGACAGaCUCGUUgaGUCGGCGu -3'
miRNA:   3'- aaaCAGUUGUCgGAGUAG--CAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 108158 0.68 0.98467
Target:  5'- aUUGggCcGCAGCCUgGUCGUgCAcACGGa -3'
miRNA:   3'- aAACa-GuUGUCGGAgUAGCA-GU-UGCC- -5'
6759 5' -48.9 NC_001875.2 + 99894 0.68 0.990937
Target:  5'- --cGUCGccgGCAGCCUCGagCG-CAACGa -3'
miRNA:   3'- aaaCAGU---UGUCGGAGUa-GCaGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 13771 0.67 0.994146
Target:  5'- -gUGgCAGCAGUCUCcGUUGUCGgacaaucguGCGGg -3'
miRNA:   3'- aaACaGUUGUCGGAG-UAGCAGU---------UGCC- -5'
6759 5' -48.9 NC_001875.2 + 102825 0.66 0.998209
Target:  5'- --cGUCAAgGGCCgcgacuUUGUgCAGCGGg -3'
miRNA:   3'- aaaCAGUUgUCGGagu---AGCA-GUUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.