miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6759 5' -48.9 NC_001875.2 + 12951 0.76 0.75247
Target:  5'- cUUGU-GACGGUCUCGUCG-CGGCGGg -3'
miRNA:   3'- aAACAgUUGUCGGAGUAGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 77622 0.66 0.998209
Target:  5'- -aUGUUGu--GCUUCAcCGUCGACGGc -3'
miRNA:   3'- aaACAGUuguCGGAGUaGCAGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 93837 0.66 0.997998
Target:  5'- --cGUCAAC-GCCUCuguagacacguuguUUGUCGACGa -3'
miRNA:   3'- aaaCAGUUGuCGGAGu-------------AGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 125584 0.66 0.997846
Target:  5'- gUUGcC-ACGGCCUCGUuugCGUCAcagucgacGCGGu -3'
miRNA:   3'- aAACaGuUGUCGGAGUA---GCAGU--------UGCC- -5'
6759 5' -48.9 NC_001875.2 + 75632 0.66 0.997424
Target:  5'- --cGUCGGCguuGGCgUCggCGUCGGCGa -3'
miRNA:   3'- aaaCAGUUG---UCGgAGuaGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 79123 0.66 0.996934
Target:  5'- gUUGUCGGCGGCgggCGcCG-CGGCGGg -3'
miRNA:   3'- aAACAGUUGUCGga-GUaGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 42952 0.66 0.996934
Target:  5'- --cGUCAGCAGCC-CG-CG-CAGCGc -3'
miRNA:   3'- aaaCAGUUGUCGGaGUaGCaGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 41005 0.67 0.994985
Target:  5'- --cGUCAACGGCCgCGUgGUCGugcucagucGCGa -3'
miRNA:   3'- aaaCAGUUGUCGGaGUAgCAGU---------UGCc -5'
6759 5' -48.9 NC_001875.2 + 72509 0.67 0.994146
Target:  5'- -aUGUgGcacuGCAGCCUCAcCGUguccauggCAACGGa -3'
miRNA:   3'- aaACAgU----UGUCGGAGUaGCA--------GUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 99851 0.74 0.838429
Target:  5'- gUUUGUCAcCGGCCUCAUCaacgCGACGc -3'
miRNA:   3'- -AAACAGUuGUCGGAGUAGca--GUUGCc -5'
6759 5' -48.9 NC_001875.2 + 33744 0.72 0.907425
Target:  5'- -cUGUUGACAaacGCgUCGUUGUCGAUGGg -3'
miRNA:   3'- aaACAGUUGU---CGgAGUAGCAGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 47247 0.69 0.982682
Target:  5'- --cGUguACAGCCUCGUgcacCAGCGGg -3'
miRNA:   3'- aaaCAguUGUCGGAGUAgca-GUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 111062 0.69 0.982682
Target:  5'- --cGUCGACGGCUUCuaCGUgGACGa -3'
miRNA:   3'- aaaCAGUUGUCGGAGuaGCAgUUGCc -5'
6759 5' -48.9 NC_001875.2 + 55351 0.68 0.990937
Target:  5'- --cGggGGCGccGCCUCGUCGUCGuccGCGGc -3'
miRNA:   3'- aaaCagUUGU--CGGAGUAGCAGU---UGCC- -5'
6759 5' -48.9 NC_001875.2 + 114276 0.68 0.990937
Target:  5'- -aUGUgCGGCAGCCgcUCG-CGcCAACGGu -3'
miRNA:   3'- aaACA-GUUGUCGG--AGUaGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 102825 0.66 0.998209
Target:  5'- --cGUCAAgGGCCgcgacuUUGUgCAGCGGg -3'
miRNA:   3'- aaaCAGUUgUCGGagu---AGCA-GUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 4478 0.79 0.613246
Target:  5'- --cGUCGACAGCCUCAaaGuacUCGGCGGg -3'
miRNA:   3'- aaaCAGUUGUCGGAGUagC---AGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 91762 0.78 0.624136
Target:  5'- --cGUCAgcgccGCGGCCUCGUCGUaguGCGGc -3'
miRNA:   3'- aaaCAGU-----UGUCGGAGUAGCAgu-UGCC- -5'
6759 5' -48.9 NC_001875.2 + 128903 0.71 0.941727
Target:  5'- -gUGgaaGACAGCUUCcccAUCGUCAACGa -3'
miRNA:   3'- aaACag-UUGUCGGAG---UAGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 121121 0.69 0.980506
Target:  5'- --cGUCGACAGaCUCGUUgaGUCGGCGu -3'
miRNA:   3'- aaaCAGUUGUCgGAGUAG--CAGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.