Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6759 | 5' | -48.9 | NC_001875.2 | + | 4478 | 0.79 | 0.613246 |
Target: 5'- --cGUCGACAGCCUCAaaGuacUCGGCGGg -3' miRNA: 3'- aaaCAGUUGUCGGAGUagC---AGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 12951 | 0.76 | 0.75247 |
Target: 5'- cUUGU-GACGGUCUCGUCG-CGGCGGg -3' miRNA: 3'- aAACAgUUGUCGGAGUAGCaGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 13771 | 0.67 | 0.994146 |
Target: 5'- -gUGgCAGCAGUCUCcGUUGUCGgacaaucguGCGGg -3' miRNA: 3'- aaACaGUUGUCGGAG-UAGCAGU---------UGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 19642 | 0.67 | 0.995723 |
Target: 5'- -cUGUCAACGGcCCUUAcggCGUCua-GGa -3' miRNA: 3'- aaACAGUUGUC-GGAGUa--GCAGuugCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 22094 | 0.67 | 0.994146 |
Target: 5'- gUUUGUCuggGCAaaaaCCUUAUCGUCAACa- -3' miRNA: 3'- -AAACAGu--UGUc---GGAGUAGCAGUUGcc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 23239 | 0.66 | 0.997424 |
Target: 5'- --gGUUAGCAGCUg-GUCGgagaacagCGACGGg -3' miRNA: 3'- aaaCAGUUGUCGGagUAGCa-------GUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 33744 | 0.72 | 0.907425 |
Target: 5'- -cUGUUGACAaacGCgUCGUUGUCGAUGGg -3' miRNA: 3'- aaACAGUUGU---CGgAGUAGCAGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 41005 | 0.67 | 0.994985 |
Target: 5'- --cGUCAACGGCCgCGUgGUCGugcucagucGCGa -3' miRNA: 3'- aaaCAGUUGUCGGaGUAgCAGU---------UGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 42952 | 0.66 | 0.996934 |
Target: 5'- --cGUCAGCAGCC-CG-CG-CAGCGc -3' miRNA: 3'- aaaCAGUUGUCGGaGUaGCaGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 45299 | 0.67 | 0.994985 |
Target: 5'- ---cUC-GCAGCCagaCGUCGUCAACGa -3' miRNA: 3'- aaacAGuUGUCGGa--GUAGCAGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 47247 | 0.69 | 0.982682 |
Target: 5'- --cGUguACAGCCUCGUgcacCAGCGGg -3' miRNA: 3'- aaaCAguUGUCGGAGUAgca-GUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 55351 | 0.68 | 0.990937 |
Target: 5'- --cGggGGCGccGCCUCGUCGUCGuccGCGGc -3' miRNA: 3'- aaaCagUUGU--CGGAGUAGCAGU---UGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 58079 | 0.67 | 0.994985 |
Target: 5'- -cUGUCGGCGGUCUggcgcgugcgcaCGUUGUUAGCGu -3' miRNA: 3'- aaACAGUUGUCGGA------------GUAGCAGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 58272 | 0.67 | 0.995723 |
Target: 5'- -gUGUCAcccGgGGUgUCGUCG-CGACGGu -3' miRNA: 3'- aaACAGU---UgUCGgAGUAGCaGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 66529 | 0.66 | 0.997846 |
Target: 5'- ---aUCuuUAGCCUCGUCGaggaGGCGGa -3' miRNA: 3'- aaacAGuuGUCGGAGUAGCag--UUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 72509 | 0.67 | 0.994146 |
Target: 5'- -aUGUgGcacuGCAGCCUCAcCGUguccauggCAACGGa -3' miRNA: 3'- aaACAgU----UGUCGGAGUaGCA--------GUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 75632 | 0.66 | 0.997424 |
Target: 5'- --cGUCGGCguuGGCgUCggCGUCGGCGa -3' miRNA: 3'- aaaCAGUUG---UCGgAGuaGCAGUUGCc -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 77622 | 0.66 | 0.998209 |
Target: 5'- -aUGUUGu--GCUUCAcCGUCGACGGc -3' miRNA: 3'- aaACAGUuguCGGAGUaGCAGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 79123 | 0.66 | 0.996934 |
Target: 5'- gUUGUCGGCGGCgggCGcCG-CGGCGGg -3' miRNA: 3'- aAACAGUUGUCGga-GUaGCaGUUGCC- -5' |
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6759 | 5' | -48.9 | NC_001875.2 | + | 91762 | 0.78 | 0.624136 |
Target: 5'- --cGUCAgcgccGCGGCCUCGUCGUaguGCGGc -3' miRNA: 3'- aaaCAGU-----UGUCGGAGUAGCAgu-UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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