miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6759 5' -48.9 NC_001875.2 + 128903 0.71 0.941727
Target:  5'- -gUGgaaGACAGCUUCcccAUCGUCAACGa -3'
miRNA:   3'- aaACag-UUGUCGGAG---UAGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 128827 0.66 0.996773
Target:  5'- --cGUCA--AGCCcgacacgaugaagcUCAUCGUCAACuGGa -3'
miRNA:   3'- aaaCAGUugUCGG--------------AGUAGCAGUUG-CC- -5'
6759 5' -48.9 NC_001875.2 + 125584 0.66 0.997846
Target:  5'- gUUGcC-ACGGCCUCGUuugCGUCAcagucgacGCGGu -3'
miRNA:   3'- aAACaGuUGUCGGAGUA---GCAGU--------UGCC- -5'
6759 5' -48.9 NC_001875.2 + 121121 0.69 0.980506
Target:  5'- --cGUCGACAGaCUCGUUgaGUCGGCGu -3'
miRNA:   3'- aaaCAGUUGUCgGAGUAG--CAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 114276 0.68 0.990937
Target:  5'- -aUGUgCGGCAGCCgcUCG-CGcCAACGGu -3'
miRNA:   3'- aaACA-GUUGUCGG--AGUaGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 111062 0.69 0.982682
Target:  5'- --cGUCGACGGCUUCuaCGUgGACGa -3'
miRNA:   3'- aaaCAGUUGUCGGAGuaGCAgUUGCc -5'
6759 5' -48.9 NC_001875.2 + 108158 0.68 0.98467
Target:  5'- aUUGggCcGCAGCCUgGUCGUgCAcACGGa -3'
miRNA:   3'- aAACa-GuUGUCGGAgUAGCA-GU-UGCC- -5'
6759 5' -48.9 NC_001875.2 + 103939 0.66 0.99637
Target:  5'- ----aUAACGGCgUCGUCGcCGAUGGc -3'
miRNA:   3'- aaacaGUUGUCGgAGUAGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 102825 0.66 0.998209
Target:  5'- --cGUCAAgGGCCgcgacuUUGUgCAGCGGg -3'
miRNA:   3'- aaaCAGUUgUCGGagu---AGCA-GUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 101594 0.66 0.998209
Target:  5'- -cUGUCGACcuGGCCag--CGUCAACGc -3'
miRNA:   3'- aaACAGUUG--UCGGaguaGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 99894 0.68 0.990937
Target:  5'- --cGUCGccgGCAGCCUCGagCG-CAACGa -3'
miRNA:   3'- aaaCAGU---UGUCGGAGUa-GCaGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 99851 0.74 0.838429
Target:  5'- gUUUGUCAcCGGCCUCAUCaacgCGACGc -3'
miRNA:   3'- -AAACAGUuGUCGGAGUAGca--GUUGCc -5'
6759 5' -48.9 NC_001875.2 + 98110 1.1 0.00987
Target:  5'- gUUUGUCAACAGCCUCAUCGUCAACGGg -3'
miRNA:   3'- -AAACAGUUGUCGGAGUAGCAGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 93837 0.66 0.997998
Target:  5'- --cGUCAAC-GCCUCuguagacacguuguUUGUCGACGa -3'
miRNA:   3'- aaaCAGUUGuCGGAGu-------------AGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 93544 0.66 0.996934
Target:  5'- cUUGUCGGCGcucGCCaccgCGUCGUCGuACGc -3'
miRNA:   3'- aAACAGUUGU---CGGa---GUAGCAGU-UGCc -5'
6759 5' -48.9 NC_001875.2 + 91762 0.78 0.624136
Target:  5'- --cGUCAgcgccGCGGCCUCGUCGUaguGCGGc -3'
miRNA:   3'- aaaCAGU-----UGUCGGAGUAGCAgu-UGCC- -5'
6759 5' -48.9 NC_001875.2 + 79123 0.66 0.996934
Target:  5'- gUUGUCGGCGGCgggCGcCG-CGGCGGg -3'
miRNA:   3'- aAACAGUUGUCGga-GUaGCaGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 77622 0.66 0.998209
Target:  5'- -aUGUUGu--GCUUCAcCGUCGACGGc -3'
miRNA:   3'- aaACAGUuguCGGAGUaGCAGUUGCC- -5'
6759 5' -48.9 NC_001875.2 + 75632 0.66 0.997424
Target:  5'- --cGUCGGCguuGGCgUCggCGUCGGCGa -3'
miRNA:   3'- aaaCAGUUG---UCGgAGuaGCAGUUGCc -5'
6759 5' -48.9 NC_001875.2 + 72509 0.67 0.994146
Target:  5'- -aUGUgGcacuGCAGCCUCAcCGUguccauggCAACGGa -3'
miRNA:   3'- aaACAgU----UGUCGGAGUaGCA--------GUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.