Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6761 | 3' | -48.4 | NC_001875.2 | + | 45164 | 0.67 | 0.997487 |
Target: 5'- gCCAGGUACgucUCCAGcaccGCGUugAGGUcGUc -3' miRNA: 3'- -GGUCUAUG---AGGUUu---CGCGugUUCA-CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 21306 | 0.67 | 0.997487 |
Target: 5'- gCAGAaaaGCUCaaGAAGCGC-CAGGUGg -3' miRNA: 3'- gGUCUa--UGAGg-UUUCGCGuGUUCACg -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 1035 | 0.67 | 0.997487 |
Target: 5'- gCGGG-GC-CCGAGGCGCACAGcGUuggGCg -3' miRNA: 3'- gGUCUaUGaGGUUUCGCGUGUU-CA---CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 24794 | 0.67 | 0.997487 |
Target: 5'- aCAGGUGCgugauugacgCCAuAGUGUACGAuUGCc -3' miRNA: 3'- gGUCUAUGa---------GGUuUCGCGUGUUcACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 93854 | 0.67 | 0.997487 |
Target: 5'- aCCAacGGUugUCgGcgcuGAGCGCGCAGGccGCc -3' miRNA: 3'- -GGU--CUAugAGgU----UUCGCGUGUUCa-CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 91853 | 0.67 | 0.996455 |
Target: 5'- aCCAGucggccacggGCccCCAGGGCGCcuGCuGGUGCg -3' miRNA: 3'- -GGUCua--------UGa-GGUUUCGCG--UGuUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 65578 | 0.67 | 0.995821 |
Target: 5'- gCCAGAagagcUugUCCcaguuGGCGgCGCA-GUGCg -3' miRNA: 3'- -GGUCU-----AugAGGuu---UCGC-GUGUuCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 60652 | 0.67 | 0.995821 |
Target: 5'- cCCAGccaAUGCgcguaCCAAAGUGCGCGcuGGcgGCa -3' miRNA: 3'- -GGUC---UAUGa----GGUUUCGCGUGU--UCa-CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 131497 | 0.67 | 0.995097 |
Target: 5'- gCAGAUcgacAgUCUgcGGCGCGC-GGUGCa -3' miRNA: 3'- gGUCUA----UgAGGuuUCGCGUGuUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 35636 | 0.67 | 0.997008 |
Target: 5'- gCGGAcuaUCUGgcGCaGCGCAAGUGCg -3' miRNA: 3'- gGUCUaugAGGUuuCG-CGUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 115777 | 0.67 | 0.995097 |
Target: 5'- gCCGuGUGCgUCCAcAGCG-ACGAGUGUu -3' miRNA: 3'- -GGUcUAUG-AGGUuUCGCgUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 34886 | 0.67 | 0.997008 |
Target: 5'- gCCGGAaaaggACUacgagcgcgagaUCAAGGCGCGCcaguuuuuuGGGUGCg -3' miRNA: 3'- -GGUCUa----UGA------------GGUUUCGCGUG---------UUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 23096 | 0.68 | 0.992296 |
Target: 5'- aCCAGGUcGCUCU--GGCGCGCcAGUu- -3' miRNA: 3'- -GGUCUA-UGAGGuuUCGCGUGuUCAcg -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 39315 | 0.68 | 0.991121 |
Target: 5'- gCAGAgaaaACgcgCCGGGcGCGCACGAGcGCc -3' miRNA: 3'- gGUCUa---UGa--GGUUU-CGCGUGUUCaCG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 122522 | 0.68 | 0.994186 |
Target: 5'- gCCGGGcagcuucgccgauUGCgUCC--GGCGCGCA-GUGCa -3' miRNA: 3'- -GGUCU-------------AUG-AGGuuUCGCGUGUuCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 84325 | 0.68 | 0.994274 |
Target: 5'- gCCugcGGUAC-CCGGAGCG-GCGAGUGg -3' miRNA: 3'- -GGu--CUAUGaGGUUUCGCgUGUUCACg -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 25841 | 0.68 | 0.993344 |
Target: 5'- cCCAGAUGaagucggggCCAuGGCGCAuCAAGaGCc -3' miRNA: 3'- -GGUCUAUga-------GGUuUCGCGU-GUUCaCG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 94440 | 0.68 | 0.992296 |
Target: 5'- uCUAGGUACUC---GGCGCACAacucGGUcuGCu -3' miRNA: 3'- -GGUCUAUGAGguuUCGCGUGU----UCA--CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 122811 | 0.68 | 0.992296 |
Target: 5'- gCCGGcgGCUCCAAacgcaaGGCGUcCGAG-GUg -3' miRNA: 3'- -GGUCuaUGAGGUU------UCGCGuGUUCaCG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 35773 | 0.68 | 0.992296 |
Target: 5'- aCGGcgcGUugUCCAuaguGCGUGCcGGUGCg -3' miRNA: 3'- gGUC---UAugAGGUuu--CGCGUGuUCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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