miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 47525 0.66 0.998559
Target:  5'- uCCGGGUACcgcaggcgCCGcuacuAGGCGCGCAucugGCa -3'
miRNA:   3'- -GGUCUAUGa-------GGU-----UUCGCGUGUuca-CG- -5'
6761 3' -48.4 NC_001875.2 + 47890 0.72 0.932249
Target:  5'- -uGGuGUACUCCGAGuucGCGCGguGGUGCu -3'
miRNA:   3'- ggUC-UAUGAGGUUU---CGCGUguUCACG- -5'
6761 3' -48.4 NC_001875.2 + 49583 0.68 0.994007
Target:  5'- gCAGcUGCgcgCCGAcgagcgcuaccaccAGCGCGCAAGcgGCu -3'
miRNA:   3'- gGUCuAUGa--GGUU--------------UCGCGUGUUCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 50133 0.71 0.959849
Target:  5'- aCAGucGCUCgGu-GCGCGCGGGUGUg -3'
miRNA:   3'- gGUCuaUGAGgUuuCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 51706 0.69 0.988351
Target:  5'- -----aGCagCGAcGCGCACGAGUGCg -3'
miRNA:   3'- ggucuaUGagGUUuCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 52368 0.71 0.955901
Target:  5'- gCCAGcg--UCCaAGAGCGCaaguGCAGGUGCg -3'
miRNA:   3'- -GGUCuaugAGG-UUUCGCG----UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 60652 0.67 0.995821
Target:  5'- cCCAGccaAUGCgcguaCCAAAGUGCGCGcuGGcgGCa -3'
miRNA:   3'- -GGUC---UAUGa----GGUUUCGCGUGU--UCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 64264 0.66 0.998256
Target:  5'- aCGG--GCUCaucauCAAGGUGCACAuaauGUGCg -3'
miRNA:   3'- gGUCuaUGAG-----GUUUCGCGUGUu---CACG- -5'
6761 3' -48.4 NC_001875.2 + 65578 0.67 0.995821
Target:  5'- gCCAGAagagcUugUCCcaguuGGCGgCGCA-GUGCg -3'
miRNA:   3'- -GGUCU-----AugAGGuu---UCGC-GUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 72555 0.66 0.997901
Target:  5'- aCGGGcGCUgCGggcgcgggcgcGGGCGCuGCGGGUGCg -3'
miRNA:   3'- gGUCUaUGAgGU-----------UUCGCG-UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 72692 0.7 0.980848
Target:  5'- aCCAGGUuuuGCUCCGcGGUGCGCGccguuaauUGCg -3'
miRNA:   3'- -GGUCUA---UGAGGUuUCGCGUGUuc------ACG- -5'
6761 3' -48.4 NC_001875.2 + 74010 0.69 0.989809
Target:  5'- aCCGG-UACgagagcaCCGcGGCGCACAAGauUGCc -3'
miRNA:   3'- -GGUCuAUGa------GGUuUCGCGUGUUC--ACG- -5'
6761 3' -48.4 NC_001875.2 + 74875 0.66 0.998559
Target:  5'- gCGGAUuuGCagCUAAaacacggggcGGUGUACGAGUGCg -3'
miRNA:   3'- gGUCUA--UGa-GGUU----------UCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 77550 0.66 0.998049
Target:  5'- cCCAGcUACUUCGAGGUGUACGucaccaaguuuacguGGgaccgGCg -3'
miRNA:   3'- -GGUCuAUGAGGUUUCGCGUGU---------------UCa----CG- -5'
6761 3' -48.4 NC_001875.2 + 78240 0.66 0.997901
Target:  5'- gUCAGAUugUgCu-GGUGCACGGGgucGCu -3'
miRNA:   3'- -GGUCUAugAgGuuUCGCGUGUUCa--CG- -5'
6761 3' -48.4 NC_001875.2 + 78297 0.66 0.998256
Target:  5'- cCCGuuuGcgGCUCgCGcugguAGCGCACGAcGUGCg -3'
miRNA:   3'- -GGU---CuaUGAG-GUu----UCGCGUGUU-CACG- -5'
6761 3' -48.4 NC_001875.2 + 79088 0.69 0.988351
Target:  5'- aCAaGUACUCgGAcggcAGCGCGCAAaUGCu -3'
miRNA:   3'- gGUcUAUGAGgUU----UCGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 84325 0.68 0.994274
Target:  5'- gCCugcGGUAC-CCGGAGCG-GCGAGUGg -3'
miRNA:   3'- -GGu--CUAUGaGGUUUCGCgUGUUCACg -5'
6761 3' -48.4 NC_001875.2 + 84401 0.7 0.978506
Target:  5'- gCCGGA-GCUUCGGcggcGGCGCguAUAGGUGCc -3'
miRNA:   3'- -GGUCUaUGAGGUU----UCGCG--UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 84650 0.7 0.980848
Target:  5'- gCGuGUGCUCCAGcAGCGCcuuGCAuucGUGCa -3'
miRNA:   3'- gGUcUAUGAGGUU-UCGCG---UGUu--CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.