miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 1035 0.67 0.997487
Target:  5'- gCGGG-GC-CCGAGGCGCACAGcGUuggGCg -3'
miRNA:   3'- gGUCUaUGaGGUUUCGCGUGUU-CA---CG- -5'
6761 3' -48.4 NC_001875.2 + 5306 0.7 0.970213
Target:  5'- cCCGacGAccACUCCAuuGCGCGCuaccugcucgccGAGUGCg -3'
miRNA:   3'- -GGU--CUa-UGAGGUuuCGCGUG------------UUCACG- -5'
6761 3' -48.4 NC_001875.2 + 5533 0.66 0.998559
Target:  5'- gCCGGccGCcgUUGAGGCGCGCGuuaaGGUGCc -3'
miRNA:   3'- -GGUCuaUGa-GGUUUCGCGUGU----UCACG- -5'
6761 3' -48.4 NC_001875.2 + 6202 0.66 0.998256
Target:  5'- gCCG----UUUCAAAGCGCGCAAuUGCg -3'
miRNA:   3'- -GGUcuauGAGGUUUCGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 21306 0.67 0.997487
Target:  5'- gCAGAaaaGCUCaaGAAGCGC-CAGGUGg -3'
miRNA:   3'- gGUCUa--UGAGg-UUUCGCGuGUUCACg -5'
6761 3' -48.4 NC_001875.2 + 23096 0.68 0.992296
Target:  5'- aCCAGGUcGCUCU--GGCGCGCcAGUu- -3'
miRNA:   3'- -GGUCUA-UGAGGuuUCGCGUGuUCAcg -5'
6761 3' -48.4 NC_001875.2 + 23792 0.68 0.993244
Target:  5'- cCCAGGUcgccgacgugucGCUCCGcggcgucGGGCGCGCc-GUGUc -3'
miRNA:   3'- -GGUCUA------------UGAGGU-------UUCGCGUGuuCACG- -5'
6761 3' -48.4 NC_001875.2 + 24794 0.67 0.997487
Target:  5'- aCAGGUGCgugauugacgCCAuAGUGUACGAuUGCc -3'
miRNA:   3'- gGUCUAUGa---------GGUuUCGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 25841 0.68 0.993344
Target:  5'- cCCAGAUGaagucggggCCAuGGCGCAuCAAGaGCc -3'
miRNA:   3'- -GGUCUAUga-------GGUuUCGCGU-GUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 31784 0.67 0.995324
Target:  5'- cCCAGcagcaccGUcaGCUCCAcaaacagcaaaaccAGCGCGCAacAGUGCa -3'
miRNA:   3'- -GGUC-------UA--UGAGGUu-------------UCGCGUGU--UCACG- -5'
6761 3' -48.4 NC_001875.2 + 33213 0.68 0.993729
Target:  5'- gCCGGGgaaaaaacacgcggGCUCCGAcguGGCGCGCucuuUGCg -3'
miRNA:   3'- -GGUCUa-------------UGAGGUU---UCGCGUGuuc-ACG- -5'
6761 3' -48.4 NC_001875.2 + 34335 0.67 0.995821
Target:  5'- cCCGGcgGCUCUAuGAGCgGCACAu-UGCc -3'
miRNA:   3'- -GGUCuaUGAGGU-UUCG-CGUGUucACG- -5'
6761 3' -48.4 NC_001875.2 + 34886 0.67 0.997008
Target:  5'- gCCGGAaaaggACUacgagcgcgagaUCAAGGCGCGCcaguuuuuuGGGUGCg -3'
miRNA:   3'- -GGUCUa----UGA------------GGUUUCGCGUG---------UUCACG- -5'
6761 3' -48.4 NC_001875.2 + 35636 0.67 0.997008
Target:  5'- gCGGAcuaUCUGgcGCaGCGCAAGUGCg -3'
miRNA:   3'- gGUCUaugAGGUuuCG-CGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 35773 0.68 0.992296
Target:  5'- aCGGcgcGUugUCCAuaguGCGUGCcGGUGCg -3'
miRNA:   3'- gGUC---UAugAGGUuu--CGCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 36705 0.67 0.99766
Target:  5'- uCCAGAUcgccggccguggcgcGCUCCAcaacgguuAGGCGCuCGAG-GUg -3'
miRNA:   3'- -GGUCUA---------------UGAGGU--------UUCGCGuGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 39315 0.68 0.991121
Target:  5'- gCAGAgaaaACgcgCCGGGcGCGCACGAGcGCc -3'
miRNA:   3'- gGUCUa---UGa--GGUUU-CGCGUGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 41772 0.69 0.982788
Target:  5'- aCCGGGUugUCCAGguuuuccAG-GCACucguuguAGUGCu -3'
miRNA:   3'- -GGUCUAugAGGUU-------UCgCGUGu------UCACG- -5'
6761 3' -48.4 NC_001875.2 + 45164 0.67 0.997487
Target:  5'- gCCAGGUACgucUCCAGcaccGCGUugAGGUcGUc -3'
miRNA:   3'- -GGUCUAUG---AGGUUu---CGCGugUUCA-CG- -5'
6761 3' -48.4 NC_001875.2 + 45966 0.66 0.998816
Target:  5'- aCCAGGUGCggcgguaccCCAGcgugacGGaCGCGCAccacaacaacgcGGUGCa -3'
miRNA:   3'- -GGUCUAUGa--------GGUU------UC-GCGUGU------------UCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.