Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6761 | 3' | -48.4 | NC_001875.2 | + | 96165 | 1.15 | 0.005857 |
Target: 5'- aCCAGAUACUCCAAAGCGCACAAGUGCc -3' miRNA: 3'- -GGUCUAUGAGGUUUCGCGUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 126829 | 0.75 | 0.839916 |
Target: 5'- aCCgAGGcgGCg-CAAAGUGCACAAGUGCc -3' miRNA: 3'- -GG-UCUa-UGagGUUUCGCGUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 86739 | 0.75 | 0.848489 |
Target: 5'- --cGAUACagCAAGGCGCACAAGcaGCa -3' miRNA: 3'- gguCUAUGagGUUUCGCGUGUUCa-CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 91920 | 0.73 | 0.895007 |
Target: 5'- aCGGGcACUCCAuggcGGCGUACGAGUaaGCc -3' miRNA: 3'- gGUCUaUGAGGUu---UCGCGUGUUCA--CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 87042 | 0.73 | 0.920911 |
Target: 5'- -----cGCUUCAAAGCGCACGuguucaaagcGGUGCu -3' miRNA: 3'- ggucuaUGAGGUUUCGCGUGU----------UCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 47890 | 0.72 | 0.932249 |
Target: 5'- -uGGuGUACUCCGAGuucGCGCGguGGUGCu -3' miRNA: 3'- ggUC-UAUGAGGUUU---CGCGUguUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 52368 | 0.71 | 0.955901 |
Target: 5'- gCCAGcg--UCCaAGAGCGCaaguGCAGGUGCg -3' miRNA: 3'- -GGUCuaugAGG-UUUCGCG----UGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 50133 | 0.71 | 0.959849 |
Target: 5'- aCAGucGCUCgGu-GCGCGCGGGUGUg -3' miRNA: 3'- gGUCuaUGAGgUuuCGCGUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 5306 | 0.7 | 0.970213 |
Target: 5'- cCCGacGAccACUCCAuuGCGCGCuaccugcucgccGAGUGCg -3' miRNA: 3'- -GGU--CUa-UGAGGUuuCGCGUG------------UUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 102977 | 0.7 | 0.975958 |
Target: 5'- cCCAagcGUACUCUAGcGGCG-ACAAGUGCc -3' miRNA: 3'- -GGUc--UAUGAGGUU-UCGCgUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 84401 | 0.7 | 0.978506 |
Target: 5'- gCCGGA-GCUUCGGcggcGGCGCguAUAGGUGCc -3' miRNA: 3'- -GGUCUaUGAGGUU----UCGCG--UGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 84650 | 0.7 | 0.980848 |
Target: 5'- gCGuGUGCUCCAGcAGCGCcuuGCAuucGUGCa -3' miRNA: 3'- gGUcUAUGAGGUU-UCGCG---UGUu--CACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 89560 | 0.7 | 0.980848 |
Target: 5'- gCGGGUGC-CCAguguuggcgaGAGCGCGCA-GUGa -3' miRNA: 3'- gGUCUAUGaGGU----------UUCGCGUGUuCACg -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 110270 | 0.7 | 0.980848 |
Target: 5'- gCCGGcugGC-CgCGGAGCGCGCGGGcUGCc -3' miRNA: 3'- -GGUCua-UGaG-GUUUCGCGUGUUC-ACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 72692 | 0.7 | 0.980848 |
Target: 5'- aCCAGGUuuuGCUCCGcGGUGCGCGccguuaauUGCg -3' miRNA: 3'- -GGUCUA---UGAGGUuUCGCGUGUuc------ACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 97525 | 0.7 | 0.980848 |
Target: 5'- gCCGGGcgaaaUugUgaCCGAAggcaacGCGCACGAGUGCc -3' miRNA: 3'- -GGUCU-----AugA--GGUUU------CGCGUGUUCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 41772 | 0.69 | 0.982788 |
Target: 5'- aCCGGGUugUCCAGguuuuccAG-GCACucguuguAGUGCu -3' miRNA: 3'- -GGUCUAugAGGUU-------UCgCGUGu------UCACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 96216 | 0.69 | 0.982994 |
Target: 5'- gCCAGAUAgUCCGcgucggcguuGGGCGCGuuCAGGgaacGCa -3' miRNA: 3'- -GGUCUAUgAGGU----------UUCGCGU--GUUCa---CG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 113537 | 0.69 | 0.988351 |
Target: 5'- gCGGcgGCggggCCAauAAGCGCGCGAagcggccuuGUGCg -3' miRNA: 3'- gGUCuaUGa---GGU--UUCGCGUGUU---------CACG- -5' |
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6761 | 3' | -48.4 | NC_001875.2 | + | 119045 | 0.69 | 0.988351 |
Target: 5'- gUAGAcUGgUCCGgcGUGCGCAuGUGCg -3' miRNA: 3'- gGUCU-AUgAGGUuuCGCGUGUuCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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