miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 34886 0.67 0.997008
Target:  5'- gCCGGAaaaggACUacgagcgcgagaUCAAGGCGCGCcaguuuuuuGGGUGCg -3'
miRNA:   3'- -GGUCUa----UGA------------GGUUUCGCGUG---------UUCACG- -5'
6761 3' -48.4 NC_001875.2 + 94440 0.68 0.992296
Target:  5'- uCUAGGUACUC---GGCGCACAacucGGUcuGCu -3'
miRNA:   3'- -GGUCUAUGAGguuUCGCGUGU----UCA--CG- -5'
6761 3' -48.4 NC_001875.2 + 122811 0.68 0.992296
Target:  5'- gCCGGcgGCUCCAAacgcaaGGCGUcCGAG-GUg -3'
miRNA:   3'- -GGUCuaUGAGGUU------UCGCGuGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 35773 0.68 0.992296
Target:  5'- aCGGcgcGUugUCCAuaguGCGUGCcGGUGCg -3'
miRNA:   3'- gGUC---UAugAGGUuu--CGCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 23792 0.68 0.993244
Target:  5'- cCCAGGUcgccgacgugucGCUCCGcggcgucGGGCGCGCc-GUGUc -3'
miRNA:   3'- -GGUCUA------------UGAGGU-------UUCGCGUGuuCACG- -5'
6761 3' -48.4 NC_001875.2 + 49583 0.68 0.994007
Target:  5'- gCAGcUGCgcgCCGAcgagcgcuaccaccAGCGCGCAAGcgGCu -3'
miRNA:   3'- gGUCuAUGa--GGUU--------------UCGCGUGUUCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 84325 0.68 0.994274
Target:  5'- gCCugcGGUAC-CCGGAGCG-GCGAGUGg -3'
miRNA:   3'- -GGu--CUAUGaGGUUUCGCgUGUUCACg -5'
6761 3' -48.4 NC_001875.2 + 115777 0.67 0.995097
Target:  5'- gCCGuGUGCgUCCAcAGCG-ACGAGUGUu -3'
miRNA:   3'- -GGUcUAUG-AGGUuUCGCgUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 131497 0.67 0.995097
Target:  5'- gCAGAUcgacAgUCUgcGGCGCGC-GGUGCa -3'
miRNA:   3'- gGUCUA----UgAGGuuUCGCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 74010 0.69 0.989809
Target:  5'- aCCGG-UACgagagcaCCGcGGCGCACAAGauUGCc -3'
miRNA:   3'- -GGUCuAUGa------GGUuUCGCGUGUUC--ACG- -5'
6761 3' -48.4 NC_001875.2 + 96019 0.69 0.989809
Target:  5'- aCCAGAcGC-CCAugcugugcguGGCGCGCGAGUu- -3'
miRNA:   3'- -GGUCUaUGaGGUu---------UCGCGUGUUCAcg -5'
6761 3' -48.4 NC_001875.2 + 119045 0.69 0.988351
Target:  5'- gUAGAcUGgUCCGgcGUGCGCAuGUGCg -3'
miRNA:   3'- gGUCU-AUgAGGUuuCGCGUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 91920 0.73 0.895007
Target:  5'- aCGGGcACUCCAuggcGGCGUACGAGUaaGCc -3'
miRNA:   3'- gGUCUaUGAGGUu---UCGCGUGUUCA--CG- -5'
6761 3' -48.4 NC_001875.2 + 87042 0.73 0.920911
Target:  5'- -----cGCUUCAAAGCGCACGuguucaaagcGGUGCu -3'
miRNA:   3'- ggucuaUGAGGUUUCGCGUGU----------UCACG- -5'
6761 3' -48.4 NC_001875.2 + 47890 0.72 0.932249
Target:  5'- -uGGuGUACUCCGAGuucGCGCGguGGUGCu -3'
miRNA:   3'- ggUC-UAUGAGGUUU---CGCGUguUCACG- -5'
6761 3' -48.4 NC_001875.2 + 5306 0.7 0.970213
Target:  5'- cCCGacGAccACUCCAuuGCGCGCuaccugcucgccGAGUGCg -3'
miRNA:   3'- -GGU--CUa-UGAGGUuuCGCGUG------------UUCACG- -5'
6761 3' -48.4 NC_001875.2 + 102977 0.7 0.975958
Target:  5'- cCCAagcGUACUCUAGcGGCG-ACAAGUGCc -3'
miRNA:   3'- -GGUc--UAUGAGGUU-UCGCgUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 84401 0.7 0.978506
Target:  5'- gCCGGA-GCUUCGGcggcGGCGCguAUAGGUGCc -3'
miRNA:   3'- -GGUCUaUGAGGUU----UCGCG--UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 97525 0.7 0.980848
Target:  5'- gCCGGGcgaaaUugUgaCCGAAggcaacGCGCACGAGUGCc -3'
miRNA:   3'- -GGUCU-----AugA--GGUUU------CGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 110270 0.7 0.980848
Target:  5'- gCCGGcugGC-CgCGGAGCGCGCGGGcUGCc -3'
miRNA:   3'- -GGUCua-UGaG-GUUUCGCGUGUUC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.