miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 96165 1.15 0.005857
Target:  5'- aCCAGAUACUCCAAAGCGCACAAGUGCc -3'
miRNA:   3'- -GGUCUAUGAGGUUUCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 122522 0.68 0.994186
Target:  5'- gCCGGGcagcuucgccgauUGCgUCC--GGCGCGCA-GUGCa -3'
miRNA:   3'- -GGUCU-------------AUG-AGGuuUCGCGUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 34335 0.67 0.995821
Target:  5'- cCCGGcgGCUCUAuGAGCgGCACAu-UGCc -3'
miRNA:   3'- -GGUCuaUGAGGU-UUCG-CGUGUucACG- -5'
6761 3' -48.4 NC_001875.2 + 121159 0.66 0.998816
Target:  5'- uCCAGccguUGCggcagcgCCu--GCGC-CAAGUGCa -3'
miRNA:   3'- -GGUCu---AUGa------GGuuuCGCGuGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 84650 0.7 0.980848
Target:  5'- gCGuGUGCUCCAGcAGCGCcuuGCAuucGUGCa -3'
miRNA:   3'- gGUcUAUGAGGUU-UCGCG---UGUu--CACG- -5'
6761 3' -48.4 NC_001875.2 + 89560 0.7 0.980848
Target:  5'- gCGGGUGC-CCAguguuggcgaGAGCGCGCA-GUGa -3'
miRNA:   3'- gGUCUAUGaGGU----------UUCGCGUGUuCACg -5'
6761 3' -48.4 NC_001875.2 + 41772 0.69 0.982788
Target:  5'- aCCGGGUugUCCAGguuuuccAG-GCACucguuguAGUGCu -3'
miRNA:   3'- -GGUCUAugAGGUU-------UCgCGUGu------UCACG- -5'
6761 3' -48.4 NC_001875.2 + 96216 0.69 0.982994
Target:  5'- gCCAGAUAgUCCGcgucggcguuGGGCGCGuuCAGGgaacGCa -3'
miRNA:   3'- -GGUCUAUgAGGU----------UUCGCGU--GUUCa---CG- -5'
6761 3' -48.4 NC_001875.2 + 51706 0.69 0.988351
Target:  5'- -----aGCagCGAcGCGCACGAGUGCg -3'
miRNA:   3'- ggucuaUGagGUUuCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 33213 0.68 0.993729
Target:  5'- gCCGGGgaaaaaacacgcggGCUCCGAcguGGCGCGCucuuUGCg -3'
miRNA:   3'- -GGUCUa-------------UGAGGUU---UCGCGUGuuc-ACG- -5'
6761 3' -48.4 NC_001875.2 + 23096 0.68 0.992296
Target:  5'- aCCAGGUcGCUCU--GGCGCGCcAGUu- -3'
miRNA:   3'- -GGUCUA-UGAGGuuUCGCGUGuUCAcg -5'
6761 3' -48.4 NC_001875.2 + 79088 0.69 0.988351
Target:  5'- aCAaGUACUCgGAcggcAGCGCGCAAaUGCu -3'
miRNA:   3'- gGUcUAUGAGgUU----UCGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 86739 0.75 0.848489
Target:  5'- --cGAUACagCAAGGCGCACAAGcaGCa -3'
miRNA:   3'- gguCUAUGagGUUUCGCGUGUUCa-CG- -5'
6761 3' -48.4 NC_001875.2 + 94300 0.68 0.993244
Target:  5'- uUCuGGUGCUCCAGcagguugGGCGCguccagGCAGG-GCg -3'
miRNA:   3'- -GGuCUAUGAGGUU-------UCGCG------UGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 52368 0.71 0.955901
Target:  5'- gCCAGcg--UCCaAGAGCGCaaguGCAGGUGCg -3'
miRNA:   3'- -GGUCuaugAGG-UUUCGCG----UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 113537 0.69 0.988351
Target:  5'- gCGGcgGCggggCCAauAAGCGCGCGAagcggccuuGUGCg -3'
miRNA:   3'- gGUCuaUGa---GGU--UUCGCGUGUU---------CACG- -5'
6761 3' -48.4 NC_001875.2 + 25841 0.68 0.993344
Target:  5'- cCCAGAUGaagucggggCCAuGGCGCAuCAAGaGCc -3'
miRNA:   3'- -GGUCUAUga-------GGUuUCGCGU-GUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 31784 0.67 0.995324
Target:  5'- cCCAGcagcaccGUcaGCUCCAcaaacagcaaaaccAGCGCGCAacAGUGCa -3'
miRNA:   3'- -GGUC-------UA--UGAGGUu-------------UCGCGUGU--UCACG- -5'
6761 3' -48.4 NC_001875.2 + 50133 0.71 0.959849
Target:  5'- aCAGucGCUCgGu-GCGCGCGGGUGUg -3'
miRNA:   3'- gGUCuaUGAGgUuuCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 72692 0.7 0.980848
Target:  5'- aCCAGGUuuuGCUCCGcGGUGCGCGccguuaauUGCg -3'
miRNA:   3'- -GGUCUA---UGAGGUuUCGCGUGUuc------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.