miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 131497 0.67 0.995097
Target:  5'- gCAGAUcgacAgUCUgcGGCGCGC-GGUGCa -3'
miRNA:   3'- gGUCUA----UgAGGuuUCGCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 126829 0.75 0.839916
Target:  5'- aCCgAGGcgGCg-CAAAGUGCACAAGUGCc -3'
miRNA:   3'- -GG-UCUa-UGagGUUUCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 122811 0.68 0.992296
Target:  5'- gCCGGcgGCUCCAAacgcaaGGCGUcCGAG-GUg -3'
miRNA:   3'- -GGUCuaUGAGGUU------UCGCGuGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 122522 0.68 0.994186
Target:  5'- gCCGGGcagcuucgccgauUGCgUCC--GGCGCGCA-GUGCa -3'
miRNA:   3'- -GGUCU-------------AUG-AGGuuUCGCGUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 121159 0.66 0.998816
Target:  5'- uCCAGccguUGCggcagcgCCu--GCGC-CAAGUGCa -3'
miRNA:   3'- -GGUCu---AUGa------GGuuuCGCGuGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 120644 0.66 0.998256
Target:  5'- uCCGGcgcggcgucGUGCUCCAcaacGGCGCGCAAcuUGUc -3'
miRNA:   3'- -GGUC---------UAUGAGGUu---UCGCGUGUUc-ACG- -5'
6761 3' -48.4 NC_001875.2 + 119045 0.69 0.988351
Target:  5'- gUAGAcUGgUCCGgcGUGCGCAuGUGCg -3'
miRNA:   3'- gGUCU-AUgAGGUuuCGCGUGUuCACG- -5'
6761 3' -48.4 NC_001875.2 + 115777 0.67 0.995097
Target:  5'- gCCGuGUGCgUCCAcAGCG-ACGAGUGUu -3'
miRNA:   3'- -GGUcUAUG-AGGUuUCGCgUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 113537 0.69 0.988351
Target:  5'- gCGGcgGCggggCCAauAAGCGCGCGAagcggccuuGUGCg -3'
miRNA:   3'- gGUCuaUGa---GGU--UUCGCGUGUU---------CACG- -5'
6761 3' -48.4 NC_001875.2 + 112020 0.66 0.999033
Target:  5'- aCAacgACUCCGAGGUGCGCAucacuuucaacaAGgGCg -3'
miRNA:   3'- gGUcuaUGAGGUUUCGCGUGU------------UCaCG- -5'
6761 3' -48.4 NC_001875.2 + 110803 0.66 0.997901
Target:  5'- aCGGAUACaacgCCGcgcagguGGaCGCGCuGGUGCg -3'
miRNA:   3'- gGUCUAUGa---GGUu------UC-GCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 110270 0.7 0.980848
Target:  5'- gCCGGcugGC-CgCGGAGCGCGCGGGcUGCc -3'
miRNA:   3'- -GGUCua-UGaG-GUUUCGCGUGUUC-ACG- -5'
6761 3' -48.4 NC_001875.2 + 109109 0.66 0.998559
Target:  5'- --cGGUGCguggCC--GGCGCACAAGUagGCc -3'
miRNA:   3'- gguCUAUGa---GGuuUCGCGUGUUCA--CG- -5'
6761 3' -48.4 NC_001875.2 + 102977 0.7 0.975958
Target:  5'- cCCAagcGUACUCUAGcGGCG-ACAAGUGCc -3'
miRNA:   3'- -GGUc--UAUGAGGUU-UCGCgUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 97525 0.7 0.980848
Target:  5'- gCCGGGcgaaaUugUgaCCGAAggcaacGCGCACGAGUGCc -3'
miRNA:   3'- -GGUCU-----AugA--GGUUU------CGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 96216 0.69 0.982994
Target:  5'- gCCAGAUAgUCCGcgucggcguuGGGCGCGuuCAGGgaacGCa -3'
miRNA:   3'- -GGUCUAUgAGGU----------UUCGCGU--GUUCa---CG- -5'
6761 3' -48.4 NC_001875.2 + 96165 1.15 0.005857
Target:  5'- aCCAGAUACUCCAAAGCGCACAAGUGCc -3'
miRNA:   3'- -GGUCUAUGAGGUUUCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 96019 0.69 0.989809
Target:  5'- aCCAGAcGC-CCAugcugugcguGGCGCGCGAGUu- -3'
miRNA:   3'- -GGUCUaUGaGGUu---------UCGCGUGUUCAcg -5'
6761 3' -48.4 NC_001875.2 + 94440 0.68 0.992296
Target:  5'- uCUAGGUACUC---GGCGCACAacucGGUcuGCu -3'
miRNA:   3'- -GGUCUAUGAGguuUCGCGUGU----UCA--CG- -5'
6761 3' -48.4 NC_001875.2 + 94300 0.68 0.993244
Target:  5'- uUCuGGUGCUCCAGcagguugGGCGCguccagGCAGG-GCg -3'
miRNA:   3'- -GGuCUAUGAGGUU-------UCGCG------UGUUCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.