miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 38648 0.67 0.870747
Target:  5'- cGCGUAUUgcGCGCUG-GCCGGAcAGg- -3'
miRNA:   3'- -CGCGUGAa-CGCGACgCGGUCUaUCag -5'
6761 5' -55 NC_001875.2 + 96989 0.67 0.863067
Target:  5'- uGCGCAagUUGCGUUGCGaCGGGUGu-- -3'
miRNA:   3'- -CGCGUg-AACGCGACGCgGUCUAUcag -5'
6761 5' -55 NC_001875.2 + 32984 0.67 0.863067
Target:  5'- cGCGCACg-GUGUUGCGCUcgc-GGUCg -3'
miRNA:   3'- -CGCGUGaaCGCGACGCGGucuaUCAG- -5'
6761 5' -55 NC_001875.2 + 18278 0.67 0.855167
Target:  5'- gGCGCGCcgUGCGCgaccGCGCCGuuGAUuGGg- -3'
miRNA:   3'- -CGCGUGa-ACGCGa---CGCGGU--CUA-UCag -5'
6761 5' -55 NC_001875.2 + 12420 0.67 0.855167
Target:  5'- cGCGCGCcaagcaggccgUUGCGUgcGCGCCGcGGUGGa- -3'
miRNA:   3'- -CGCGUG-----------AACGCGa-CGCGGU-CUAUCag -5'
6761 5' -55 NC_001875.2 + 14796 0.67 0.855167
Target:  5'- aUGCAUcacgaUUGCcaGgaGCGCCAGcAUGGUCa -3'
miRNA:   3'- cGCGUG-----AACG--CgaCGCGGUC-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 83326 0.67 0.855167
Target:  5'- gGCGCGCgccGgGCggcGCGCCAaaAUAGUCc -3'
miRNA:   3'- -CGCGUGaa-CgCGa--CGCGGUc-UAUCAG- -5'
6761 5' -55 NC_001875.2 + 81009 0.67 0.847053
Target:  5'- gGCGCGCgacGCGUUGCuGCCGGucuacaAGUa -3'
miRNA:   3'- -CGCGUGaa-CGCGACG-CGGUCua----UCAg -5'
6761 5' -55 NC_001875.2 + 113573 0.67 0.845405
Target:  5'- cGCGCACggcGCGCcauUGgGCCAGcacggcguucgAGUCg -3'
miRNA:   3'- -CGCGUGaa-CGCG---ACgCGGUCua---------UCAG- -5'
6761 5' -55 NC_001875.2 + 41814 0.67 0.838733
Target:  5'- cGCGCGCcgGCGCcGCGgCCAGuugcgcGUCc -3'
miRNA:   3'- -CGCGUGaaCGCGaCGC-GGUCuau---CAG- -5'
6761 5' -55 NC_001875.2 + 16937 0.67 0.838733
Target:  5'- aGCGCAUcgGCGCguUGCGCCAcGUGa-- -3'
miRNA:   3'- -CGCGUGaaCGCG--ACGCGGUcUAUcag -5'
6761 5' -55 NC_001875.2 + 128016 0.68 0.830214
Target:  5'- cCGCGCcgGCG-UGCGCCGacgacggccGGUGGUCg -3'
miRNA:   3'- cGCGUGaaCGCgACGCGGU---------CUAUCAG- -5'
6761 5' -55 NC_001875.2 + 119061 0.68 0.794318
Target:  5'- uGCGCAUgUGCGCgGCGCCccGGcUGGa- -3'
miRNA:   3'- -CGCGUGaACGCGaCGCGG--UCuAUCag -5'
6761 5' -55 NC_001875.2 + 129036 0.68 0.794318
Target:  5'- cCGCGCUcGCGCU-CGCCAGAc---- -3'
miRNA:   3'- cGCGUGAaCGCGAcGCGGUCUaucag -5'
6761 5' -55 NC_001875.2 + 74301 0.68 0.794318
Target:  5'- aGCGCAUcgccuacgGCGCgcagGCGCCGGAcAG-Ca -3'
miRNA:   3'- -CGCGUGaa------CGCGa---CGCGGUCUaUCaG- -5'
6761 5' -55 NC_001875.2 + 49535 0.68 0.784934
Target:  5'- -aGUAgaaUUGCGCgccGCGCCAGGgcGUCg -3'
miRNA:   3'- cgCGUg--AACGCGa--CGCGGUCUauCAG- -5'
6761 5' -55 NC_001875.2 + 98813 0.69 0.775404
Target:  5'- gGCGCcCgccGCGCUGCGCUuaAGggGGUUc -3'
miRNA:   3'- -CGCGuGaa-CGCGACGCGG--UCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 94618 0.69 0.774444
Target:  5'- aGCGCggcagcgGCUUGCugcaccGCUGCGCCAGGc---- -3'
miRNA:   3'- -CGCG-------UGAACG------CGACGCGGUCUaucag -5'
6761 5' -55 NC_001875.2 + 33037 0.69 0.76574
Target:  5'- aGCGCgGCggGCGCcGCGCCgcgcGGAUAG-Cg -3'
miRNA:   3'- -CGCG-UGaaCGCGaCGCGG----UCUAUCaG- -5'
6761 5' -55 NC_001875.2 + 58502 0.69 0.76574
Target:  5'- cCGCGC-UGCGUuucgaaauUGCGCCGGAccuguGUCg -3'
miRNA:   3'- cGCGUGaACGCG--------ACGCGGUCUau---CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.